Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1188 ATGTTTACTACTATAATAATCATAAACCTCAGAGGTTGCTGTGTCGCACACCAAATGGCACCAGTTTGGTCCTCATGCTCAAACCGTTTTGTTGTCGCAGCAACCAAACTCCAATCTCACATTTGTTTCACTGCCGCCATTGCCATTCATCTCTATCACTATAGCACCTCTCCTCAACCATATCAACCGAACCCACAAAGCCCTTCGCCCAAATTAGTGCCTTTACCACTCCACAAACAAAACCAATCAATACCCATTTCATTTTCTTCCCTAAACTACAAAGAATCGATCATTTCTGCTATAAAATCTATTTCCCGTAAGACCCATTTGCTCCAAGTCCATGCTCACATTCTCACCACAACCCTCATTCAAGACCCTGCAGTTTCTCATTACTTCTTATGCCGCGTATCTCTCTCTGGCCCGTTGCAATACCCTGGCTATTCTCAGTGCTTCTTTGAGCAAATCAGTTACCCTTTTGTTTCCCACTACAATACCATGATTAGAGCTTATTCCTTGAGCGACTCGCCTCAAAAGTCTCTTTTTTTATATCGTGATATGAGAAGAAGAGGCATTGCTGCTAACCCTTTAACGTCTTCCTTTGTTGTTAAGTCTTGTATTAGGTTTTTGTATCTTCTTGGAGGGGTTCAGGTTCATTGCAACATCTTCAAAGACGGGCATCAATCAGATACTCTTTTGCTTACTGCTCTCATGGACCTGTATTCACAATGTCAGAAATATGATGATGCATGTAAGGTGTTTGATGAAATGCTTCTTAGAGATACTGTTTCTTGGAATGTGATGATCTCTTGTTGTATTCGAAATAATCGGACCCGGGACGCTTTGAGCTTGTTTGATGTTATGCAGAGTGAAAATTATAAATGTGAGCCTGACGATGTAACTTGTTTGCTTCTTCTTCAAGCGTGTGCTCGTTTGAATGCCTTGGAATTTGGTGAACAAATTCATAGGCATATTATGGAACATGGTTACGGGGGTGCTCTCAATTTGTCTAATTCTCTCATATCAATGTATTCGCGGTGTGGTTGTATAGATAAGGCTTATGAGGTGTTTATGGGAATGAAGAATAGAAGTGTTGTTTCATGGAGTGCAATGATATCTGGTTTGGCAGTGAATGGGTATGGGAGAGAAGCTATTGAGGCATTTGAAGAGATGCAGAGAAATGGCATTCAGCCTGATGATCATACATTCACGGGCGTCCTTTCTGCTTGCAGTCATTCTGGATTATTAGATGAGGGGGTGTCGTTTTTTGACCGAATGGTCTCAGAGTTTAGGATAACACCAGCCATCCACCATTATGGTTGCATGGTTGATCTCATGGGTCGTGCTGGCTTACTTGATAAGGCCTACCAGCTTATCATGTCGATGGAGGCAAAGCCAGATTCCACAGTGTGGAGAACCTTGCTCGGGGCATGCAGAATTCATGGACATGTTACACTTGGTGAACGAGTGATTGAACATTTGATTGAATTGAGAGCTCAAGAAGCTGGAGATTATGTTTTGCTTCTGAATCTTTATTCTTCAGCTGAACAATGGGAAAAGGTTGCAGAAGTTAGAAAACTAATGAGACAAAAATCAATCCAAACAACACCTGGTTGTTGCACAATTGAGCTTAAAGGAGTTGTACATGAGTTTGTTGTGGATGATATTTCACATTCAAGAAAGGTTGAAATTTATAACACACTGGATGAGATTAATAAGCAACTGAGGATAGCTGGTTATGTTGTTGAACTTTCATCTGAACTGCATAAGATGGATGACAAAGGAAAAGGATATGCACTCTCTTATCACAGTGAAAAACTGGCAATTGCATTCGGTGTTCTTGTCACTCCACCGGGCATGGCATTGAGAGTGGCCTCTAATCTCCGCATTTGTGTTGATTGCCACAATTTTCTGAAACTTTTTTCTGCAGTTTACAACCGGGATGTAATTCTCAGAGACCATAAGCGGTTTCACCACTTCCGGCGAGGACATTGCTCCTGTAGTGACTATTGGTAG 2013 0.4148 MFTTIIIINLRGCCVAHQMAPVWSSCSNRFVVAATKLQSHICFTAAIAIHLYHYSTSPQPYQPNPQSPSPKLVPLPLHKQNQSIPISFSSLNYKESIISAIKSISRKTHLLQVHAHILTTTLIQDPAVSHYFLCRVSLSGPLQYPGYSQCFFEQISYPFVSHYNTMIRAYSLSDSPQKSLFLYRDMRRRGIAANPLTSSFVVKSCIRFLYLLGGVQVHCNIFKDGHQSDTLLLTALMDLYSQCQKYDDACKVFDEMLLRDTVSWNVMISCCIRNNRTRDALSLFDVMQSENYKCEPDDVTCLLLLQACARLNALEFGEQIHRHIMEHGYGGALNLSNSLISMYSRCGCIDKAYEVFMGMKNRSVVSWSAMISGLAVNGYGREAIEAFEEMQRNGIQPDDHTFTGVLSACSHSGLLDEGVSFFDRMVSEFRITPAIHHYGCMVDLMGRAGLLDKAYQLIMSMEAKPDSTVWRTLLGACRIHGHVTLGERVIEHLIELRAQEAGDYVLLLNLYSSAEQWEKVAEVRKLMRQKSIQTTPGCCTIELKGVVHEFVVDDISHSRKVEIYNTLDEINKQLRIAGYVVELSSELHKMDDKGKGYALSYHSEKLAIAFGVLVTPPGMALRVASNLRICVDCHNFLKLFSAVYNRDVILRDHKRFHHFRRGHCSCSDYW* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1188 670 Gene3D Tetratricopeptide repeat domain 209 330 IPR011990 GO:0005515
Psa4g1188 670 Gene3D Tetratricopeptide repeat domain 337 561 IPR011990 GO:0005515
Psa4g1188 670 PANTHER BNAA06G20590D PROTEIN 90 655 - -
Psa4g1188 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Psa4g1188 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 428 IPR002885 -
Psa4g1188 670 Pfam E motif 480 542 IPR046848 -
Psa4g1188 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Psa4g1188 670 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 90 655 - -
Psa4g1188 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Psa4g1188 670 TIGRFAM PPR: pentatricopeptide repeat domain 262 293 IPR002885 -
Psa4g1188 670 TIGRFAM PPR: pentatricopeptide repeat domain 337 365 IPR002885 -
Psa4g1188 670 TIGRFAM PPR: pentatricopeptide repeat domain 400 428 IPR002885 -
Psa4g1188 670 TIGRFAM PPR: pentatricopeptide repeat domain 163 194 IPR002885 -
Psa4g1188 670 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Psa4g1188 670 TIGRFAM PPR: pentatricopeptide repeat domain 234 259 IPR002885 -
Psa4g1188 670 Gene3D Tetratricopeptide repeat domain 152 208 IPR011990 GO:0005515
Psa4g1188 670 Pfam PPR repeat 437 463 IPR002885 -
Psa4g1188 670 Pfam PPR repeat 234 257 IPR002885 -
Psa4g1188 670 Pfam PPR repeat 162 191 IPR002885 -
Psa4g1188 670 Pfam DYW family of nucleic acid deaminases 578 670 IPR032867 GO:0008270
Psa4g1188 670 Pfam PPR repeat family 260 310 IPR002885 -
Psa4g1188 670 Pfam PPR repeat family 363 410 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1188 Psa-Chr4 84808974 84811626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1188 96 670 Glycoside Hydrolase AT3G49170 33.447 2.85e-110 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1188 - - lja:Lj0g3v0169319.1 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1188 4 84808974 84811626 Psa4g1188 4 84808974 84811626 ECH
Psa2g2722 2 311491920 311494577 Psa4g1188 4 84808974 84811626 PCT