Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0549 ATGGTCGAAGCCGAACCCAAATTCTTCATGCCGGACACAATCCGAAGTGCGAGTTACGACCTCGCGGGACAGATTAAGCTCATATGGGAAGTGGTCAAAACTCCATTAATTGTGCCACTTCTGAACCTTGGAGTCTACATTTGCTTGGCAATGTCTCTCATGCTCTTCATCGAGAGGCTGTATATGGGAGTCGTCATCATCCTCGTCAAGCTGTTCTGGAAAAAACCAGAACAGCGTTACAGATACGAGCCTATTCAAGACGATGTTGAATTGGGGTCCTCCAATTTCCCAGTCGTTCTTGTCCAAATCCCAATGTTCAATGAAAGAGAGGTTTACAAGGTCTCCATTGGAGCAGCTTGCGGGCTTTCATGGCCCTCGGACCGTCTGGTGATCCAAGTCCTCGATGATTCTACTGACCCGGCTATCAAGCAACTGGTGGAGCAAGAGTGCCTGAGATGGGCAAGCAAAGGGGTAAACATAACGTATCAAATACGGGAGAACAGAACTGGATATAAAGCCGGTGCGCTGAAAGAAGGGCTCAAGCGAAGCTACGTGAAACACTGCGAGTATGTGGCCATTTTCGACGCCGACTTCAGGCCGGAGCCGGACTTTCTCCGGCGAGCCATTCCCTTCTTGGATGGCAACCCCGACCTGGCTCTGGTTCAAGCACGCTGGAGATTCGTGAATTCGGACGAATGTATACTAACGAGAATGCAAGAGATGTCTCTGGATTACCATTTCACAGTGGAGCAAGAAGTTGGGTCAGCTACTCATGCCTTCTTTGGCTTTAATGGCACAGCAGGCGTTTGGAGAATTGCTGCTATCAATGAAGCAGGAGGTTGGAAAGACAGGACAACTGTGGAAGACATGGATCTTGCAGTTCGTGCTAGCCTTAGAGGTTGGAAATTTCTCTACCTTGGTGACCTCCAGGCAAAGAGTGAGCTTCCCAGTACATTAAGGGCCTTCCGTTTTCAGCAACATCGATGGTCTTGTGGTCCTGCTAATCTTTTCCGCAAAATGGTGATGGAGATTGTCAGGAACAAGAAAGTGAAGTTTTGGAAGAAAGTGTATGTGATATATAGCTTCTTCTTTGTACGTAAAATCATAGCCCATATGGTGACCTTCTTCTTCTACTGTGTGGCGCTTCCCCTCACAATTTTAGTCCCTGAGGTTCATGTTCCAATATGGGGAGCTGTTTACATTCCTTCCATCATCACCATCCTCAATTCAGTGGGAACTCCAAGGTCCATTCACTTATTGTTCTACTGGATCCTCTTTGAGAATGTCATGTCTCTGCATCGTACCAAAGCTACTTTTATAGGTTTGCTGGAAGCTGGGAGAGCTAATGAGTGGGTTGTCACTGCAAAACTTGGAGACTCCGTGAATAATAAGAACAAAGCAGATGCTGTTAAGAACAAGATAAATGTCACCAAGCCTATCAAAAAACCCCGACTCAAATTAGCCGAAAGGTTTAATTTACTAGAGCTGGGATTTGCAGTCTTCCTCTTCTTTTGTGGATGTTATGATTATGTACATGGGAAGAACAACTACTTTGTGTACCTCTTCCTTCAGACCATAACATTTTCCATCGTTGGATTTGGCTATGTTGGCACCATTGTGTGA 1623 0.4609 MVEAEPKFFMPDTIRSASYDLAGQIKLIWEVVKTPLIVPLLNLGVYICLAMSLMLFIERLYMGVVIILVKLFWKKPEQRYRYEPIQDDVELGSSNFPVVLVQIPMFNEREVYKVSIGAACGLSWPSDRLVIQVLDDSTDPAIKQLVEQECLRWASKGVNITYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRAIPFLDGNPDLALVQARWRFVNSDECILTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVALPLTILVPEVHVPIWGAVYIPSIITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEAGRANEWVVTAKLGDSVNNKNKADAVKNKINVTKPIKKPRLKLAERFNLLELGFAVFLFFCGCYDYVHGKNNYFVYLFLQTITFSIVGFGYVGTIV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0549 540 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 365 IPR029044 -
Prci6g0549 540 Pfam Glycosyl transferase family group 2 190 398 IPR001173 -
Prci6g0549 540 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Prci6g0549 540 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 22 538 - -
Prci6g0549 540 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 88 316 IPR029044 -
Prci6g0549 540 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0549 Prci-Chr6 3587788 3592429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0549 1 540 Miscellaneous Gene Families AT5G22740 80.407 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0549 K13680 - gmx:100788761 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0549 6 3587788 3592429 Prci6g0549 6 3587788 3592429 ECH
Prci1g0250 1 2275693 2281275 Prci6g0549 6 3587788 3592429 ECH
Prci3g2910 3 40786574 40790969 Prci6g0549 6 3587788 3592429 ECH