Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01164 ATGGTTAAGGGGAAAACACTGTTCCTCTTGGTTTTGTGCTTGTGGATTTCCTTGGAAGTGATGGGGAGGAAAGAACCTTCCTCACCTACCAGTGTGAATTCCATTGTTTCTTCAAGGCCGAAGGTTGTGAAATTTGGAGCCCTCTTCCCTGTGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTTATTTTGCACAGTACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTATCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCAACTGACCCCACTCTATCTTCTCTACAATACCCATATTTTATCCGCACTACTCAGAACGATTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCCATCTATGTGGATGATGACAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTGTTAAATGAAGTGAACTTGATGGAATCCCGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTATCAATTTTCTCTATTGCCAAGAAGCTCAGAATGATGAGCAGTGGCTATGTTTGGATTTCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTAGAGTCACCTGATCCTGGCACAATGGATCTGTTACAAGGGATCGTGGCTTTTCGTCATCACATTCCTGATACTGATCTCAAGAAGAATCTTCTCTCCAGGTTGAAAAGCCAAAGAGTCAAAGAGACTGTGAGCTTCAATTCTTATGCATTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGTGGAAATATATCTTTTTCTAATGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTATCGTCACTTCGTACCTTTGATGGTGGTCCACAGTTTCTCCAGACAGTTTTGGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATTTACTTCATCCAGCATATGAAATTCTCAATATTGATGGTAGTGGATCCCGTAGAATTGGCTATTGGTCTAATCATTCTGGTTTATCAGTTATAGCTCCTGAAACTTTATATCTGAAAAAGCCGTCAAACACATCTTTGCTGAGAAATCAACAACTGTATAGTGTGATATGGCCTGGAGAGGTTACAGCTACACCAAGGGGGTGGGTATTTCCCAACAATGGACAGCCACTTAGGATAGCAGTTCCTAACCGAGTAAGCTACAAGGACTTTGTTTCTAAGGACAAGAACCCGCCAGGGGTACAAGGCTATTGCATTGACGTCTTTGAAGCAGCCATAAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTAAAAGGAATCCTAGCTACAACGACCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTCTGGATTTTACTCAACCTTTCTTGCCATCAGGGCTTGTTATTGTTGTTCCTTTTGAGGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTCAGCCGTTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACCGACTCAATCCTGAGTTCCGGGGTTCACCAAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCTCACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGTTACACAGCTAGCTTGACTTCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGAAGGAATTGACAGCTTGATCTCAAGTACAAAACCGATTGGAATTCAAGATGGTTCATTTGCACGGAAGTATCTTGTAGATGACCTCCATATAGCTGAATCTAGAATAGTTACGTTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGCCCTAATGCTGGAGGGGTTGTGGCAGTTGTTGACGAGCTTCCTTACATTGAGGTCTTGATGTCCAGCTGTCACTGTAAGTTCAGAATTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACTGCCATTCTTCAACTCTCTGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAATAAAAAGGAGTGTACAACCTTTGAAGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATTTTTCATTGCCCTGATTATTTTCTTTGCTAGAATCTTCTGTCAATATAACAAATTCATCCCAGAGTCTGAGAAAACTGATGAGGAAATTCAACCAGTCAGGAGGTCAAGACGTCCAAGCAGAACTCCTAGCCTGAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACACAGCCAAAGCTTGGATGATCATTCTGTTCCATCAGCCATCTAG 2808 0.4177 MVKGKTLFLLVLCLWISLEVMGRKEPSSPTSVNSIVSSRPKVVKFGALFPVDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRAKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLSIFSIAKKLRMMSSGYVWISTDWLPSVLDSLESPDPGTMDLLQGIVAFRHHIPDTDLKKNLLSRLKSQRVKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSNDPKLQDTNGSMLHLSSLRTFDGGPQFLQTVLGMNFTGVSGQIEFDMDKNLLHPAYEILNIDGSGSRRIGYWSNHSGLSVIAPETLYLKKPSNTSLLRNQQLYSVIWPGEVTATPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDKNPPGVQGYCIDVFEAAIKLLPYPVPRKYMLFGNGKRNPSYNDLVEQVAQNNFDAVVGDVTIVTNRTRILDFTQPFLPSGLVIVVPFEEQKSSPWSFLQPFTTEMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTKPIGIQDGSFARKYLVDDLHIAESRIVTLKNMEDYIDALQRGPNAGGVVAVVDELPYIEVLMSSCHCKFRIVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNKKECTTFEVDSNKLALTSFWGLFLICGIAFFIALIIFFARIFCQYNKFIPESEKTDEEIQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDHSVPSAI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01164 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Phco9g01164 935 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Phco9g01164 935 Gene3D - 62 406 - -
Phco9g01164 935 Gene3D - 474 590 - -
Phco9g01164 935 FunFam Glutamate receptor 475 591 - -
Phco9g01164 935 MobiDBLite consensus disorder prediction 914 935 - -
Phco9g01164 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Phco9g01164 935 Pfam Ligand-gated ion channel 823 851 IPR001320 GO:0015276|GO:0016020
Phco9g01164 935 Gene3D - 712 825 - -
Phco9g01164 935 FunFam Glutamate receptor 158 325 - -
Phco9g01164 935 FunFam Glutamate receptor 717 825 - -
Phco9g01164 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 887 IPR015683 -
Phco9g01164 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 822 IPR001638 -
Phco9g01164 935 FunFam Glutamate receptor 591 721 - -
Phco9g01164 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Phco9g01164 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Phco9g01164 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Phco9g01164 935 Gene3D - 591 711 - -
Phco9g01164 935 Pfam Receptor family ligand binding region 60 416 IPR001828 -
Phco9g01164 935 CDD GluR_Plant 478 821 - -
Phco9g01164 935 PIRSF IGluLR_plant 2 934 IPR017103 -
Phco9g01164 935 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Phco9g01164 935 Gene3D - 158 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01164 Phco-Chr9 10961102 10965645 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01164 9 10961102 10965645 Phco9g01164 9 10961102 10965645 ECH
Phco10g01312 10 35516320 35520968 Phco9g01164 9 10961102 10965645 PCT
Phco9g01164 9 10961102 10965645 Phco10g01313 10 35524694 35529914 PCT