Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01312 ATGGAGGTGATGTGGGTCACAAGTCATGGAAGAATTTTTGTAGGAAGGGTGTTGTTTCTCTTGGTTTTGTTCTTGTGGATTCCGACACAGGTAGTGGTGGGAAGGACAGGAACTACTATCACAAACTCTTCTACTTCTTCGACACCAAGAGTTTTGAGAGTTGGAGCACTGTTCAGTCTTAATTCTATAATTGGAAGATCAGCTAAACCTGCATTCGTGGCTGCTTTCGAAGATGTTAATGCTGATTCAAGCGTTCTCCATGGCATTAAACTGGAAGCTGCTTTGCATGATACAAATTGCAGTGGGTTTGCTGGAACAATGGAAGCTTTGCAGTTGATGGAGGATGAAGTGATTGCTGCAATTGGTCCGCAGTCCTCAGGAATAGCTCATGTCATCTCTCATGTGGCCAATGAACTCCATGTCCCTCTTATTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAGCTTTGGTAGATTACTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTAGGAGATGCTCTAGCAAAAAAACGTGCCAAGATTTCTTACAAGGCTGCATTTCCTCCTGGGGCCCTCAAGAAAGATATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAGTCACGGGTCTTTGTTTTGCATGCTAATCCTGAAACTTGTTTGAGCATTTTTTCTATTGCTGAGAAGCTAGGAATGATGGACGGTGGCTATGTATGGATTGCAACAGATTCGCTTGCTTCAGCACTTGATTCATCAGAGCCAGTTGATCCTAAAACAATGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTGATGAAAAGAAGAATTTTTTCTCCAGGATGAAGAGACTAATAAATAAAGAGACTCCAAGCTTCAATTCCTATGCATTGTATGCATACGATACCGTTTGGTTAGTAGCCCGTGCTCTTGATGCTTTTTTGAAAGAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAATTGAGCGACACAAATGGAAGCACACTGCATTTAGAAACACTTCATGTTTTTGATGAAGGCCCTACTTTTCTGCAGACAATTTTGAGAACCAACTACACTGGTCTCACTGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCATCCAGCATATGATATCTTGAACATTGGTGGATCTGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCGGTTGTGGCACCAGAAATTCTGTATAAGAAGCCACCTAACACTTCAACGAGCAGCCAGAAACTATACGATGTTATATGGCCTGGAGAAACTGCAGCTAAACCAAGAGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATGCTGTCCCGCGAGAATACATATTATTTGGACCTGGTAACAGAAATCCTAGCTACGATGACCTTGCAAGTCAAGTTGAACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCCAACAGGACAAGGTTTTTGGATTTTACTCAACCTTACATAGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTTCTAAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGTGGTAGACCAAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTTAGTGGTCTTGGGAGATTGGTCCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACTGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAAGTAATCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGGAAGTATTTGACAGAAGAACTCAACATACAACCATCAAGGATAGTTACATTGAAGAATATGGAGGCATATATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTGGCTGTTGTTGATGAGCTTCCTTATATTGAAATCTTAATGTCATATACAAACTGTAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTCGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAAATCCATGACAAATGGCTCTTAAAACAGGATTGTTCTACACAAGAAAATAATGTTGATTTAAGCAAACTATCTCTGAGTAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTCTCCTTGCTTTGATTGCATTCTTCATTAGAGTTCTATGTCAATACACAAAATTCAGCCCAGAAACTGAGCAACATGATGAGGAAATTTCACCAGACAGGCCAAAAGGTAAAGGGCCTTTTGGAACCACTAATAGCTTCAGAGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGGAGACGCAGTCTGAGCTCAGATGGCCAATATAGTTCATCTGCCTAA 2841 0.4136 MEVMWVTSHGRIFVGRVLFLLVLFLWIPTQVVVGRTGTTITNSSTSSTPRVLRVGALFSLNSIIGRSAKPAFVAAFEDVNADSSVLHGIKLEAALHDTNCSGFAGTMEALQLMEDEVIAAIGPQSSGIAHVISHVANELHVPLISFGATDPSLSSLQYPYFVRSTQSDYYQMYAIAALVDYYRWREIIAIYVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGALKKDISDLLNGVNLMESRVFVLHANPETCLSIFSIAEKLGMMDGGYVWIATDSLASALDSSEPVDPKTMNLLQGVLALRHHTPDTDEKKNFFSRMKRLINKETPSFNSYALYAYDTVWLVARALDAFLKEGGVVSFSSDPKLSDTNGSTLHLETLHVFDEGPTFLQTILRTNYTGLTGLVQFDNERNRIHPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQKLYDVIWPGETAAKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYAVPREYILFGPGNRNPSYDDLASQVELNNYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFILVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSYTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQENNVDLSKLSLSSFWGLFLICGIACLLALIAFFIRVLCQYTKFSPETEQHDEEISPDRPKGKGPFGTTNSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSSDGQYSSSA 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01312 946 Pfam Bacterial extracellular solute-binding proteins, family 3 544 829 IPR001638 -
Phco10g01312 946 Gene3D - 482 597 - -
Phco10g01312 946 Coils Coil 914 934 - -
Phco10g01312 946 Gene3D - 167 440 - -
Phco10g01312 946 Pfam Receptor family ligand binding region 69 424 IPR001828 -
Phco10g01312 946 PIRSF IGluLR_plant 13 946 IPR017103 -
Phco10g01312 946 Gene3D - 719 832 - -
Phco10g01312 946 CDD PBP1_GABAb_receptor_plant 53 444 IPR044440 -
Phco10g01312 946 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Phco10g01312 946 CDD GluR_Plant 485 828 - -
Phco10g01312 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Phco10g01312 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Phco10g01312 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Phco10g01312 946 MobiDBLite consensus disorder prediction 926 946 - -
Phco10g01312 946 SMART GluR_14 488 830 IPR001320 GO:0015276|GO:0016020
Phco10g01312 946 SUPERFAMILY Periplasmic binding protein-like II 465 829 - -
Phco10g01312 946 FunFam Glutamate receptor 724 832 - -
Phco10g01312 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 54 890 IPR015683 -
Phco10g01312 946 FunFam Glutamate receptor 598 728 - -
Phco10g01312 946 MobiDBLite consensus disorder prediction 884 905 - -
Phco10g01312 946 FunFam Glutamate receptor 167 326 - -
Phco10g01312 946 Pfam Ligand-gated ion channel 830 861 IPR001320 GO:0015276|GO:0016020
Phco10g01312 946 FunFam Glutamate receptor 482 598 - -
Phco10g01312 946 Gene3D - 70 415 - -
Phco10g01312 946 Gene3D - 598 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01312 Phco-Chr10 35516320 35520968 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01312 10 35516320 35520968 Phco10g01312 10 35516320 35520968 ECH
Phco10g01312 10 35516320 35520968 Phco9g01164 9 10961102 10965645 PCT