Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01313 ATGAAAAAATTAATGGTTTTGCACCTTGTGACATGGATTTGGATATGTGGTGTTGCTCACAGCACAAGGCCTGCCAGTGTGAACATTGGTGCGGTTTTTGCTTTCAATTCGGTCATAGGTAGAGTTGCGAAGGAAGCTATGGAAATGGCCGTTTCTGATGTCAATGGGGACCCCACAGTTCTCAAGGGAACCAAACTCAACTTGATAATGAAGGATGCCATGTGCAATGCTTTTCTGGGATCAATTGGAGCTTTTCAGTTACTTGAGAAAGGGGTTGCAGCCATAATTGGTCCCCAGTCATCTGCCGTAGCTCACACAGTTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCCTATGCTGCCACTGATCCAACCTTGTCCTCCCTCCAGTTTCCTTTCTTTATTCGGTCTACACAAAGTGACTTGGCACAAATGACCGCAATGGCTGATCTAATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTAGATGATGATTATGGAAGAAATGGAATATCTGCTTTGAGTGATGAACTTGAAAAGAGGAGATTGAAAATTTCTTATAAACTGCCTTTGAGTATTAAGTTTGATCTGGATGAAATCACCAACTTACTCAATCAATCCAAATTGTTTGGTCCTCGTGTTTATGTTGTTCATGTCAACCCTGATCCGAGATTGAGAATTTTTTCTGTTGCCCATAAACTGCAAATGATAGCCAAGGATTATGTCTGGCTTGTAACAGATTGTCTCTCAGCTACGCTAGGTTCATTATCCCCAGTGAATCAGACCTCTTTCGGTGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTTTGGATTCCAGGAAAAAGAGAGCTTTCGTTTCTCGGTGGACAAAAAGGCAAAGAGATGGATTGACAAATGCTAGTTTGAACTCCTATGGATTTTCTGCTTATGACACGGTTTGGGCAATTGCACTTTCAATTGATAAATTCATCAAAGTAAATAATTTTACCTTCATGCTTCTTGATAAGTATAAGCTATCTCATACAGAAGGAATTGGCGTTCAGCTTGACAAACTCAAAATCTTCACTGGTGGATCTGATCTGGTCAAGATATTATTACAATCCAATTTTACTGGTGTGAGTGGTCAAGTTAGGTTTAATTCTGATAGAAATATTGTAAGTGGTGGTTATGATATTATCAATGTCAATCAGTTGGGAATTACTAGGGTTGGTTTTTGGTCTAATTATACTGGATTTTCAGTTGTACCCCCTGAGACTCTTAAAAAAGGGGAACACAGCAGGTTTTCCAAAGATCAGAAGCTTGACAACATTACTTGGCCAGGTGGAAAGACAGATCGACCACGTGGCTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAAGTGCCAAATAGTCATGAAATTCAGGGGTATTGCATCGATGTGTTCAAGAAAGCCCTAGAATTTATCCCATATGAAGTTCCCTTTGTATTCAAGCCTTTCGGGAATGGTAAAGCAAATCCCAATTATGATGAACTTGTGAAAATGGTTGCTGATAATGTATATGATGCTGTTGTTGGAGACATCGCAATTGTGACAAACCGTACAAGGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAAGCAGGATCAAATGCTTGGGTGTTCCTCAAACCATTTACAGCAGATATGTGGTGTGCTACTGCTGCCTCATTTTTGGTGATTGGACTTGTTATATGGATTCTTGAGCACCGAGTCAACAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTAACAATGTTAATGTTCAGCCTCTCAACCCTGTTTAAGAAAAATCAGGAAGATACCATAAGCTCCCTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTATTGATGGTGATCACGGCTAGCTATACAGCTAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACAGGAATTGAGAGCTTGATTGCAAGTAACTGGCCGATTGGATACCAAGTAGGGTCATTTGCTTACAGCTATCTGGCAGATAATCTTTATGTATCAAAATCAAGGCTTATTCCACTGGGCTCCCCTGAGGAATATGCTTTAGCACTGCAGAAGGGACCGTCTGGTGGAGGGGTGGCAGCAATCGTTGATGAGATTCCGTATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATCGGACAGCCATTCGCCAAAAACAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTTTGACATGTCTACAGCAATTTTGAAACTTTCTGAGAATGGGGATCTTCATATGATACATGAGAAGTGGTTCTGTAAAATGGGCTGTCCTGAAGAAAGGACAAGCAACTCCAAGCCTGACCAGCTTCACTTGGTTAGCTTTTGGGGCCTGTATCTCTCATGTGGTGTTGTCTCTCTTGCTGCATTTTTTCTGTATCTGCTGCAAATGATTCGGCAATACGCCCGCTTCAAACAAAAGCAAAAGGATATTGCTTCTTCGTCCTCAGAACAACCATCAGGCAGTCATTGTTCCCAGGTTGTTGTTAACTTCTTCAACTTCATTGATAAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCCATCTGACAATCATCACGACCCCAACTGA 2730 0.411 MKKLMVLHLVTWIWICGVAHSTRPASVNIGAVFAFNSVIGRVAKEAMEMAVSDVNGDPTVLKGTKLNLIMKDAMCNAFLGSIGAFQLLEKGVAAIIGPQSSAVAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFIRSTQSDLAQMTAMADLIDFNGWKEVIVVFLDDDYGRNGISALSDELEKRRLKISYKLPLSIKFDLDEITNLLNQSKLFGPRVYVVHVNPDPRLRIFSVAHKLQMIAKDYVWLVTDCLSATLGSLSPVNQTSFGVLQGVVGLRQHILDSRKKRAFVSRWTKRQRDGLTNASLNSYGFSAYDTVWAIALSIDKFIKVNNFTFMLLDKYKLSHTEGIGVQLDKLKIFTGGSDLVKILLQSNFTGVSGQVRFNSDRNIVSGGYDIINVNQLGITRVGFWSNYTGFSVVPPETLKKGEHSRFSKDQKLDNITWPGGKTDRPRGWVIADNTKPLRIGVPKRASFVEFVTEVPNSHEIQGYCIDVFKKALEFIPYEVPFVFKPFGNGKANPNYDELVKMVADNVYDAVVGDIAIVTNRTRIVDFSQPFASSSLVIVAPINKAGSNAWVFLKPFTADMWCATAASFLVIGLVIWILEHRVNNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTISSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIESLIASNWPIGYQVGSFAYSYLADNLYVSKSRLIPLGSPEEYALALQKGPSGGGVAAIVDEIPYVELFLSKETDFGIIGQPFAKNSWGFAFQRESPFAFDMSTAILKLSENGDLHMIHEKWFCKMGCPEERTSNSKPDQLHLVSFWGLYLSCGVVSLAAFFLYLLQMIRQYARFKQKQKDIASSSSEQPSGSHCSQVVVNFFNFIDKKEEAIKKMFTPSDNHHDPN 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01313 909 FunFam Glutamate receptor 142 298 - -
Phco10g01313 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 863 IPR015683 -
Phco10g01313 909 Gene3D - 142 418 - -
Phco10g01313 909 FunFam Glutamate receptor 702 809 - -
Phco10g01313 909 Gene3D - 45 393 - -
Phco10g01313 909 FunFam Glutamate receptor 576 714 - -
Phco10g01313 909 PIRSF IGluLR_plant 1 909 IPR017103 -
Phco10g01313 909 CDD GluR_Plant 463 805 - -
Phco10g01313 909 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Phco10g01313 909 SUPERFAMILY Periplasmic binding protein-like II 444 805 - -
Phco10g01313 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Phco10g01313 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Phco10g01313 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 315 327 - -
Phco10g01313 909 FunFam Glutamate receptor 460 576 - -
Phco10g01313 909 Gene3D - 457 575 - -
Phco10g01313 909 Pfam Receptor family ligand binding region 44 402 IPR001828 -
Phco10g01313 909 SMART GluR_14 466 807 IPR001320 GO:0015276|GO:0016020
Phco10g01313 909 SUPERFAMILY Periplasmic binding protein-like I 22 456 IPR028082 -
Phco10g01313 909 Gene3D - 576 704 - -
Phco10g01313 909 Pfam Bacterial extracellular solute-binding proteins, family 3 466 805 IPR001638 -
Phco10g01313 909 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Phco10g01313 909 Gene3D - 753 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01313 Phco-Chr10 35524694 35529914 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01313 10 35524694 35529914 Phco10g01313 10 35524694 35529914 ECH
Phco9g01164 9 10961102 10965645 Phco10g01313 10 35524694 35529914 PCT