Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01688 ATGGCATGTTCAGCTCAAACGCTTGTTATTTTAACTAAAGATGTAGAGGCTGCAACTTACGGACCTAACGATTTGAAGATTTTTGTCACCACTACCAACATGGAAGCCAGTGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGCGAGATTTGTGGCGATGATGTGGGAGTCACGGTGGATGGAGACATGTTTGTGGCCTGCAATGAGTGTGGTTTTCCTGCATGCCGACCTTGCTATGAGTATGAACGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAAACCAGATACAAGCGTCTTAAAGGGAGCCCGCGGGTTGAGGGAGATGATGACGAGGAAGACGTGGATGATATCGAACATGAATTCAACATTGATGACCAAATGAACAAGCATAATCACTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGTACTGAAGATGATGAGAATTCTCAATTCCCAGCTGTTATTGCCGGTGGTCGTTCTCGGCCTGTTAGTGGAGAGTTGCCAATATCATCTCATTATGGGGAGCACCCTTCACTGCATAATCGTGTGCACCCATATCTGGCATCTGATCCTAGAAATGGAAAATGGGATGAAAACAAAGAGGATAGAATGGATGACTGGAAGTTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCACGGCAACCACTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCGCGGCTTGTTATCCTTGCCTTCTTCCTCCGTTATAGACTGATGAATCCTGTACATGATGCACTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAGTGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAATAAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCATTGGTTACAGCAAACACTGTTCTCTCAATCTTGGCCATGGATTACCCGGTTGAGAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACTTTTGAGGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATCGAACCTCGTGCACCAGAGATGTACTTCTGTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTAGCAAAAGCTCAGAAGGTTCCGCAAGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAATAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCCGAGAGAAAAGGCCAGGATTCCAACACCACAAGAAAGCTGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAAGCTGCTCGAGAGGCCATGTGTTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATACGAACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACTGGGTGTGTATTTAGGAGGCAAGCTTTATACGGTTATAATCCTCCCAAGGATGCCAAACGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTCAAGTATGAAGGGAATGGTGCAGATGGAGAGGCTGCAAGCCTAAGAGGACCGGACGATGATAAACAGATGTTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGCCAGTCATCTATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCTAGCCAGCTTAAAGAAGCCATTCACGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTATGGGTCTATTACAGAGGACATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCTAAGCGTCCTGCATTCAAGGGTACTGCTCCAATCAACTTGTCTGATAGACTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTTTATGGTATGGCTTTAAGGAAGGAAAGTTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTGTTCTTCCAGCTGTCTGTTTACTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCGGGTTTGTATTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCACCTCTTTGCAGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACTAACTTCACTGTTACATCAAAGGCAGCAGATGATGAAGAATTTTCAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCCTAATAATCAATATTGTTGGCGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTATTCTTTTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCGACTATAGTTGTTATATGGTCGGTACTATTGGCTTCCATTTTCTCTTTGCTTTGGGTAAGAATTGACCCATTCGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3195 0.4444 MACSAQTLVILTKDVEAATYGPNDLKIFVTTTNMEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGVTVDGDMFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGTEDDENSQFPAVIAGGRSRPVSGELPISSHYGEHPSLHNRVHPYLASDPRNGKWDENKEDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTNDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKDAKRPKMISCDCCPCFGKRKKVKYEGNGADGEAASLRGPDDDKQMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGFKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFSELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01688 1064 CDD mRING-HC-C4C4_CesA 68 118 - -
Phco8g01688 1064 FunFam Cellulose synthase 52 143 - -
Phco8g01688 1064 SUPERFAMILY Nucleotide-diphospho-sugar transferases 369 831 IPR029044 -
Phco8g01688 1064 Coils Coil 454 474 - -
Phco8g01688 1064 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 259 1031 - -
Phco8g01688 1064 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 143 IPR013083 -
Phco8g01688 1064 FunFam Cellulose synthase 473 647 - -
Phco8g01688 1064 ProSiteProfiles Zinc finger RING-type profile. 70 116 IPR001841 -
Phco8g01688 1064 MobiDBLite consensus disorder prediction 199 227 - -
Phco8g01688 1064 Pfam Zinc-binding RING-finger 60 137 IPR027934 -
Phco8g01688 1064 SUPERFAMILY RING/U-box 54 142 - -
Phco8g01688 1064 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 501 647 IPR029044 -
Phco8g01688 1064 Pfam Cellulose synthase 356 1058 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01688 Phco-Chr8 17399155 17407561 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01688 8 17399155 17407561 Phco8g01688 8 17399155 17407561 ECH
Phco8g01688 8 17399155 17407561 Phco7g02446 7 42682079 42687146 PCT
Phco7g02447 7 42692887 42698312 Phco8g01688 8 17399155 17407561 PCT