Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02446 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCACATAACCGCAATGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTATGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACTTATTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGGAGCCAGCTTTGCCCACAGTGCAAAACAAGATATAAGCGTCTCAAAGGGAGCCCGCGGGTGGAGGGAGATGATGAGGAGGAGGATGTGGATGACATTGAGCACGAGTTCAATATTGATGACGAAAAGGACAAGCATGGGCATGCTGCAGAGGCCATGCTTCATGGGAAAATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAATACCAGTGATTTCTGGGGGCCGTTCTAGGCCTGTTAGTGGGGAGTTCCCAATATCATCTAATGGTTATGGGGAGCAGATGTTGTCTTCTTCACTGCATAAACGAGTGCATCCTTATCCAATGTCTGAACCTGGGAGTGCCAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGAAAGGATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTAGAGGAAGCAAGGCAACCACTTTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATATAGAATGGTGATTATGGCGCGCCTTGTCGTTCTTGCTTTCTTCCTCAGATACAGACTTATGAATCCAGTACATGATGCAATGGGGCTGTGGCTAACCTCTATCATATGTGAAATATGGTTTGCTTTTTCATGGATTCTGGATCAGTTCCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGACCGTCTTTCCATGAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCAATGAAGGAACCTCCTCTGGTTACGGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTATATATCTGATGATGGAGCCTCAATGTGTTCATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCTAAGAAGTGGGTACCGTTTTGTAAGAAATTTTCAATAGAACCTCGGGCACCTGAGATGTACTTCAGTGAGAAGATAGACTACTTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTCGTTGCAAAAGCCCAGAAAGTTCCTCAGGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAACACTAAGGATCATCCTGGCATGATTCAAGTGTTTCTTGGAAGCAATGGGGGTCTTGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGACCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCACTGGTTCGGGTATCTGCTGTCCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCTGCCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAGATCGGGAAGAAGGTTTGCTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATACACATGATCGTTATGCCAACAGAAACACAGTTTTCTTTGACATTAACATGAAGGGTCTAGATGGTATTCAAGGACCTGCATATGTGGGGACTGGGTGTGTTTTCAGGAGGCAAGCTTTGTATGGCTATAATCCTCCAAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCCCATGTTTTGGAAGCCGCAAGAAGTACAAGGAGAAGAAGAGTGATGCAAATGGAGAGGCTGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATGCTGATGTCCCATATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATCTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCAAGTCCAGCTGCCCTGCTTAAAGAAGCAATTCATGTGATCAGCTGCGGATATGAAGATAAAACTGAATGGGGCCTTGAGCTTGGTTGGATCTATGGATCTATTACAGAAGATATTCTAACAGGCTTTAAGATGCATTGCCGTGGGTGGAGGTCTATTTACTGTATGCCAAAGAGAGCTGCATTCAAGGGCACTGCTCCAATCAACTTGTCAGATCGTCTCAATCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTATGGATTAAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACTGTGTATCCATTCACCTCCATTCCTCTTGTTGCCTATTGTATTCTTCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTTTGCTGGTTTGTACTTCGTTGCTCTCTTCTCTTCAATCATTGCAACTGGTGTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAGCAGTTTTGGGTGATTGGTGGGGTATCAGCTCATCTTTTTGCTGTGATACAAGGTCTGCTGAAGGTTCTGGCTGGAATTGACACCAACTTCACAGTTACATCCAAGGCAACAGATGATGAGGAGTTTGGAGAACTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTGGCTGGAATCTCAGATGCCATAAACAATGGGTATCAATCCTGGGGCCCACTATTTGGAAAGCTCTTCTTTTCTTTCTGGGTCATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCTACCATTGTTGTGATTTGGTCAGTTCTATTGGCTTCTATTTTCTCCTTGCTGTGGGTAAGAATTGATCCATTTGTCCTTAAGACTAAGGGACCTGATACCAAACTATGTGGAATCAACTGCTGA 3126 0.4501 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDEEEDVDDIEHEFNIDDEKDKHGHAAEAMLHGKMSYGRGPEDDENSQFPIPVISGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPMSEPGSARWDEKKEDGWKERMDDWKLQQGNLGPEPDEDPDAAMLEEARQPLSRKVPIASSKINPYRMVIMARLVVLAFFLRYRLMNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSMRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCSFESLSETAEFAKKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKEKKSDANGEAAASLKGMDDDKEMLMSHMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGLKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGVLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02446 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Phco7g02446 1041 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Phco7g02446 1041 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 818 IPR029044 -
Phco7g02446 1041 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 478 623 IPR029044 -
Phco7g02446 1041 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 235 1008 - -
Phco7g02446 1041 CDD mRING-HC-C4C4_CesA 35 85 - -
Phco7g02446 1041 FunFam Cellulose synthase 19 110 - -
Phco7g02446 1041 Pfam Cellulose synthase 332 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco7g02446 1041 SUPERFAMILY RING/U-box 21 107 - -
Phco7g02446 1041 FunFam Cellulose synthase 449 623 - -
Phco7g02446 1041 Coils Coil 430 450 - -
Phco7g02446 1041 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02446 Phco-Chr7 42682079 42687146 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02446 7 42682079 42687146 Phco7g02446 7 42682079 42687146 ECH
Phco8g01688 8 17399155 17407561 Phco7g02446 7 42682079 42687146 PCT