Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01581 ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCCGAAATTCGCCACCCACTTCTTAAGAGAAGGGTGTGGCTGGGGACATTTGAAACAGCAGAAGAAGCTGCTAGAGCCTATGATCAAGCTGCTATTCTCATGAGTGGTAGAAATGCCAAAACAAATTTCCCAATAACTCAAACCCCTGAAGGTGATCCAAAGAGCATTATCAGTGAGGACAGCCCCTCCTCCACCTCCAAGGATCTGGAGGAAATCCTGCATGCTAAGCTTCGAAAATGTGGTAAGGTGCCTTCACCTTCTATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGCGCTGGGAGACGTTCGGATTCAAATTGGGTCATGACAGTTCAGCTGGAAAAGAAGAGTACCAACAACAAAGAGACTCATCAAGCTGATAGTAACACTTCTCTTTGTCTACCTTCTTCTGATCATGACCACCACCATGAGTCTCCATCGGGTGTGACAGGTCATCACCATCATCAAGAAGTGGTGAGAGGAGAGATTGATGAAGAAGAGAGAATAGCCCTTCAAATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAACAACATTCAAGAAAGGGATGGTGGCGATGATGACACCTTTTTTCTTTAA 696 0.4626 MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSIISEDSPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLEKKSTNNKETHQADSNTSLCLPSSDHDHHHESPSGVTGHHHHQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFNNIQERDGGDDDTFFL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01581 231 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Phco8g01581 231 MobiDBLite consensus disorder prediction 207 231 - -
Phco8g01581 231 MobiDBLite consensus disorder prediction 61 82 - -
Phco8g01581 231 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Phco8g01581 231 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Phco8g01581 231 MobiDBLite consensus disorder prediction 61 84 - -
Phco8g01581 231 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Phco8g01581 231 MobiDBLite consensus disorder prediction 143 186 - -
Phco8g01581 231 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Phco8g01581 231 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Phco8g01581 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 162 - -
Phco8g01581 231 MobiDBLite consensus disorder prediction 163 186 - -
Phco8g01581 231 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Phco8g01581 231 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Phco8g01581 231 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01581 Phco-Chr8 16194930 16195735 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco8g01581 AP2 9.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01581 8 16194930 16195735 Phco7g00762 7 5909483 5910242 ECH
Phco8g01581 8 16194930 16195735 Phco8g01581 8 16194930 16195735 ECH
Phco8g01581 8 16194930 16195735 Phco7g02355 7 41262853 41263765 PCT