LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g00762	ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTACTGAAGAGAAGGGTATGGCTAGGGACATTTGAGACAGCTGAGGCTGCTGCAAGGGCTTATGACCAAGCAGCCATTTTGATGAATGGCCAGAATGCCAAGACTAACTTCCCCAATTCAAAGAACCAGGCTGAAGTCGATGCCACCAGTGTTGCTGCTGCTGCTGCTTCTCGTCATGACAACACTTTCTTATCTCCCAAAGCTCTTTCAGAACTCCTCAGCACAAAGCTCAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTGAGGCTAGATGCTGATAATTCCCACATTGGAGTGTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTGGAGCTTGGGAAGAAGCACACCGAGGGTGAATCAGCATGGTCACCAAACAGTAGTACTAACGACACTGCTGGAAACAGTGGAGTAGTAGTAGTAGACGAAGAAGAAGAAGATACACTCGCTTTGCAGATGATCGAAGAGCTACTCAATTGGAACTAG	588	0.4932	MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSKNQAEVDATSVAAAAASRHDNTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKHTEGESAWSPNSSTNDTAGNSGVVVVDEEEEDTLALQMIEELLNWN	195

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g00762	195	CDD	AP2	5	65	IPR001471	GO:0003700\|GO:0006355
	Phco7g00762	195	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	4	149	-	-
	Phco7g00762	195	ProSiteProfiles	AP2/ERF domain profile.	6	63	IPR001471	GO:0003700\|GO:0006355
	Phco7g00762	195	SUPERFAMILY	DNA-binding domain	6	64	IPR016177	GO:0003677
	Phco7g00762	195	SMART	rav1_2	6	69	IPR001471	GO:0003700\|GO:0006355
	Phco7g00762	195	FunFam	Ethylene-responsive transcription factor 2	5	64	-	-
	Phco7g00762	195	PRINTS	Ethylene responsive element binding protein signature	29	45	IPR001471	GO:0003700\|GO:0006355
	Phco7g00762	195	PRINTS	Ethylene responsive element binding protein signature	7	18	IPR001471	GO:0003700\|GO:0006355
	Phco7g00762	195	Pfam	AP2 domain	6	55	IPR001471	GO:0003700\|GO:0006355
	Phco7g00762	195	Gene3D	AP2/ERF domain	5	64	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g00762	Phco-Chr7	5909483	5910242	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco7g00762		AP2	1.6e-12	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g00762	7	5909483	5910242	Phco7g00762	7	5909483	5910242	ECH
	Phco8g01581	8	16194930	16195735	Phco7g00762	7	5909483	5910242	ECH
	Phco7g02355	7	41262853	41263765	Phco7g00762	7	5909483	5910242	ECH