Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00608 ATGGCCTCCACTTTCCCCTCTCTCCTCCTCTTCCTCTTCTCTCTCCTCACCCCCTCACTCATTTCTGCTTCCCCTGTCCAGAACCCTCAATTGGTCGCCCAAGAAGTTAACAGGAAAATCAATGCCTCTGTGGCTAGGAGGAATTTGGGTTACCTGTCATGTGGGACAGGTAACCCCATTGATGACTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAAAGGCTAGCGGATTGTGCAATTGGGTTTGGGAAAAACGCGATTGGAGGAAAGAACGGCAAAATCTACGTGGTGACGGATTCCAGCGACGATGACGCGGTGACGCCTAAGCCGGGGACGCTCCGTTACGCGGTGATTCAGGAGGAGCCTCTTTGGATCATATTCGCGAGGGACATGGTGATTAAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACGATTGATGGAAGAGGCGCTAGCGTGCACATTGCGGATGGTCCATGCATTACGATACAGTATGTGACGAATGTTATAATCCACGGGATAAATATTCATGACTGTAAGCAAGGGGGGAACGCTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGGACCGTATCCGACGGTGATGGCGTTTCCATCTTTGGAGGAAGCCACGTATGGGTTGACCATTGCTCCTTGTCTAACTGCAATGATGGGTTGATCGATGCCATTCATGGCTCTACCGCCATTACCATCTCCAACAATTACATGACTCACCATGATAAAGTCATGCTTTTGGGCCACAGCGACTCCTACACTCAAGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGAGAAGGCCTCGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCTGACCCAACCATCAATAGTCAAGGCAATAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCTCCAGAGAGTGAATGGAAAGGGTGGAATTGGAGGTCTGAAGGGGACCTACTGGTAAATGGTGCATTTTTCACAGCATCAGGGGCAGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCCTGAGTGCGAGGCCATCTTCACTGGTAGGCTCCATTACGACTAATGCGGGTGCACTGACCTGCAGAAAGGGTTCCCGCTGCTGA 1221 0.5078 MASTFPSLLLFLFSLLTPSLISASPVQNPQLVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSSDDDAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIADGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALTCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00608 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Phco8g00608 406 SUPERFAMILY Pectin lyase-like 35 401 IPR011050 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Phco8g00608 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Phco8g00608 406 SMART amb_all 132 329 IPR002022 -
Phco8g00608 406 FunFam Pectate lyase 57 399 - -
Phco8g00608 406 Pfam Pectate lyase 139 323 IPR002022 -
Phco8g00608 406 Gene3D - 57 399 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00608 Phco-Chr8 6103271 6104958 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00608 8 6103271 6104958 Phco7g02018 7 34656715 34658833 ECH
Phco2g02929 2 58266490 58268707 Phco8g00608 8 6103271 6104958 ECH
Phco7g02018 7 34656715 34658833 Phco8g00608 8 6103271 6104958 ECH
Phco8g00608 8 6103271 6104958 Phco8g00608 8 6103271 6104958 ECH
Phco8g00608 8 6103271 6104958 Phco7g02018 7 34656715 34658833 PCT