Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02018 ATGACAACCACTCTAGTCTCTTTGCTTTTCTTCCTCTTCTCCCTCCTCACTCCTACCCTCATTTTCTCTTCACCACTTCATAATCCTGAAGAGGTCGTGCAAGAGGTCAACAGGAAAATAAACGCCTCCATGGCTAGGCATAGGAGGAGCTTGGGCTACCTCTCATGCGGCAGTGGCAACCCCATTGATGACTGTTGGCGGTGCGACCCGAATTGGGAGCAGAACCGGCAAAGGCTAGCGGACTGCGCAATTGGGTTCGGAAAGAACGCCATCGGCGGAAGGGATGGGAAGATCTACGTGGTGGACGACGCCGGTGACGACGACCCGGTGAACCCGAAGCCAGGGACGCTCCGCCACGCCGTTATCCAAGACGAGCCCCTCTGGATCATCTTCGCGCGCGACATGGTGATCCAACTGAAGGAGGAGCTTCTGATGAACTCCTTCAAGACCATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGACGGCCCCTGCATCACCGTGCAGTACGTGACGAACGTGATCATCCACGGCATCCACCTGCACGACTGCAAGCAGGGAGGGAACGCTATGGTGCGGTCCTCCCCACGGCACTACGGGTGGAGAACGGTGTCGGACGGCGACGGCGTGTCCATCTTCGGAGGAAGCCACGTGTGGGTGGACCACTGCTCCTTGTCGAACTGCAACGATGGGTTGATCGACGCCATCCATGGGTCCACTGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTCATGCTCTTAGGTCATAGTGACTCTTACACTCAGGACAAGGACATGCAGGTCACTATTGCTTTCAACCACTTCGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCAGCAGAGAGTGAATGGCAGGGCTGGAACTGGAGATCAGAAGGGGACATGTTAGTAAATGGTGCATTTTTCACTGCTTCCGGAGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCCTAAGTGCAAGACCATCATCACTGGTTGCTTCCATTACAACAGGTGCTGGTGCACTCAGCTGCAAGAAAGCTTCTCCTTGCTCATCATGA 1233 0.541 MTTTLVSLLFFLFSLLTPTLIFSSPLHNPEEVVQEVNRKINASMARHRRSLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIADGPCITVQYVTNVIIHGIHLHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQGWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTGAGALSCKKASPCSS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02018 410 FunFam Pectate lyase 59 401 - -
Phco7g02018 410 SMART amb_all 134 331 IPR002022 -
Phco7g02018 410 SUPERFAMILY Pectin lyase-like 49 402 IPR011050 -
Phco7g02018 410 Gene3D - 59 401 IPR012334 -
Phco7g02018 410 PANTHER PECTATE LYASE 18-RELATED 27 406 IPR045032 GO:0030570
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Phco7g02018 410 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Phco7g02018 410 Pfam Pectate lyase 143 325 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02018 Phco-Chr7 34656715 34658833 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02018 7 34656715 34658833 Phco7g02018 7 34656715 34658833 ECH
Phco8g00608 8 6103271 6104958 Phco7g02018 7 34656715 34658833 ECH
Phco2g02929 2 58266490 58268707 Phco7g02018 7 34656715 34658833 ECH
Phco7g02018 7 34656715 34658833 Phco8g00608 8 6103271 6104958 ECH
Phco8g00608 8 6103271 6104958 Phco7g02018 7 34656715 34658833 PCT