Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02929 ATGAAAGTGATGATGGGAGGAAGTACTATTACTCCTATAGAGTTTTTGATTCTGATTGCAGATCAAGCAGTTATGGAAATTCCAATTCCACTGTCATTTATGTTACTCTTTCTACTGCTTGTACCTTCCTGCATTTGTTCATCCCCACTTCAAGATCCTGAACTAGTGGTCGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTGTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGGTGTGATGCAAATTGGGAGAATAATCGAAAGAATTTAGCAGAGTGTTCCATTGGGTTTGGTAAGCGTGCAATTGGAGGGAGGGATGGTAAAATATATGTGGTGACTGACCCTGGTGATCACCCTGTGAATCCCAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAACCACTGTGGATCATTTTCAAGCGTGACATGGTGATCCGTTTGAAGGAAGAGCTTATGATGAACTCTTTCAAGACCATTGATGGTAGAGGGGCAACTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGACCAACATTATCATTCATGGGATTAACATTCATGACTGCAAACAAGGAGGGAATGCCTATGTGAGGGACTCCCCTACACACTATGGGTGGAGGACTCTCTCAGATGGTGATGGCATCTCCATCTTTGGTGGGAGTCATGTTTGGGTGGATCACTGTTCTCTCTCCAATTGCCGTGATGGCCTAATTGATGCCATCCATGGATCCACTGCCATTACCATATCCAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGACTGGTACAGAGAATGCCAAGATGTAGGTATGGATACTTCCATGTGGTGAACAATGATTACACCCACTGGAAAATGTATGCCATAGGGGGAAGTGCTGCTCCAACTATCAATAGCCAAGGGAATAGATTTCTTGCTCCCAATGACCATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCAGCACAGAGCAAATGGAAGAACTGGAATTGGAGGTCAACGGGAGATTTGATGTTAAACGGTGCATTCTTCACGGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCATCAAGTTTGGCAGCAAAACCATCTTCACTTGTCAGTTCTATAACAGCATCAGCTGGATCACTTAGATGTAGAAAGGGTTCACGTTGCTGA 1284 0.4424 MKVMMGGSTITPIEFLILIADQAVMEIPIPLSFMLLFLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDANWENNRKNLAECSIGFGKRAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIRLKEELMMNSFKTIDGRGATVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTHWKMYAIGGSAAPTINSQGNRFLAPNDHTFKEVTKRENSAQSKWKNWNWRSTGDLMLNGAFFTASGAGASSSYARASSLAAKPSSLVSSITASAGSLRCRKGSRC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 369 393 IPR018082 -
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 398 421 IPR018082 -
Phco2g02929 427 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Phco2g02929 427 PANTHER PECTATE LYASE 18-RELATED 52 425 IPR045032 GO:0030570
Phco2g02929 427 SUPERFAMILY Pectin lyase-like 64 421 IPR011050 -
Phco2g02929 427 Pfam Pectate lyase 161 344 IPR002022 -
Phco2g02929 427 Gene3D - 79 420 IPR012334 -
Phco2g02929 427 FunFam Pectate lyase 79 420 - -
Phco2g02929 427 SMART amb_all 153 350 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02929 Phco-Chr2 58266490 58268707 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02929 2 58266490 58268707 Phco2g02929 2 58266490 58268707 ECH
Phco2g02929 2 58266490 58268707 Phco8g00608 8 6103271 6104958 ECH
Phco2g02929 2 58266490 58268707 Phco7g02018 7 34656715 34658833 ECH