Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00853 ATGGCTCTGCTCTCACACACCCCACACCCTTATGAAGTGCTCTTCGCCATCGCAATCTTCCTCGTGTTCAGAGGGGTTTCAGGGGCAACCTTTACTTTCGTCAACAAGTGCGATTACACGGTGTGGCCAGGGATTTTAGGGACACCGGAACTCGCAACCACAGGCTTTGAACTCACGAAGGGGGGCTCCAGAAGCTTCCAGGCTCCGACCGGTTGGTCCGGAAGATTCTGGGGCAGAACCGGTTGCCAGTTCGACAATTCCGGCCGCGGGACGTGCTCCACCGCCGACTGCGGTTCCGGAGAGGTCAACTGCAACGGCGCCGGAGCCTCCCCGCCGGCCACTCTCGCGGAGTTCACGCTCGGGACCGGTTCCATGGACTACTACGACGTGAGCCTCGTCGACGGCTATAATCTGCCGATGATGGTCGCTCCGAGAGGCGGGTCGGGGTCCTGCGCCGCCACGGGGTGCGGCGAGGATCTCAATCGGCGTTGCCCATCGGAACTAAGGGTGGAGGGTGGCGACGCGTGTCAGAGCGCGTGCAGCGCGTTTGGGAAACCGGAGTATTGCTGCAACGGCGCGTTTGGTAACCCTTCCACGTGCAAGCCTTCCACGTACTCGCAAATTTTCAAGTCCGCATGTCCCAAAGCCTATAGCTACGCGTACGATGATGCCACTAGCACGTTCACGTGTTCCGGCGCCGACTACACCATCACATTTTGTCCCTCTTCTCCTAGTTTGAAGTCTTCAACGGATTCGAGTCCAAAGGGAACGGATTCTGGGTCTGGGTCTGGGTCTGGGAGTGTGACGGGGACAGGTTCATCGGTGGAACAATCTGAATTGGCTTCTACTTCGTGGTTGGCCGACATGGCAACGGCTACAGGGGCCTCGACGCGAGTACGGCCATTTGTGACTTCAAAGGTGTCTTTTTGGGTGGTTGTTCTTTTCATTCTTTCTCTTTTGGTGGGTCCCTCTCTCTTCTATTGA 984 0.5772 MALLSHTPHPYEVLFAIAIFLVFRGVSGATFTFVNKCDYTVWPGILGTPELATTGFELTKGGSRSFQAPTGWSGRFWGRTGCQFDNSGRGTCSTADCGSGEVNCNGAGASPPATLAEFTLGTGSMDYYDVSLVDGYNLPMMVAPRGGSGSCAATGCGEDLNRRCPSELRVEGGDACQSACSAFGKPEYCCNGAFGNPSTCKPSTYSQIFKSACPKAYSYAYDDATSTFTCSGADYTITFCPSSPSLKSSTDSSPKGTDSGSGSGSGSVTGTGSSVEQSELASTSWLADMATATGASTRVRPFVTSKVSFWVVVLFILSLLVGPSLFY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00853 327 CDD TLP-PA 30 240 - -
Phco4g00853 327 PANTHER OS03G0233200 PROTEIN 18 241 IPR001938 -
Phco4g00853 327 Pfam Thaumatin family 35 241 IPR001938 -
Phco4g00853 327 SMART tha2 31 241 IPR001938 -
Phco4g00853 327 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Phco4g00853 327 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Phco4g00853 327 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Phco4g00853 327 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Phco4g00853 327 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Phco4g00853 327 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Phco4g00853 327 Gene3D Thaumatin 29 241 IPR037176 -
Phco4g00853 327 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
Phco4g00853 327 FunFam THAUMATIN-LIKE PROTEIN 1 29 241 - -
Phco4g00853 327 MobiDBLite consensus disorder prediction 244 273 - -
Phco4g00853 327 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Phco4g00853 327 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00853 Phco-Chr4 6606442 6607644 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00853 4 6606442 6607644 Phco4g00853 4 6606442 6607644 ECH
Phco8g00394 8 3591677 3594034 Phco4g00853 4 6606442 6607644 ECH