Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01689 ATGTATTCTGCTGCTACTTCCTTTACTTCACCACTCCACCATGACCTTCACAACTTCCACTCAAGAAGGTTACTCCTTCACTCCCCACTCAACCAATCAGCCAAGCCCCCAGCAAGCAGCCACGATTCCACAGAAACATATCTTGGAGATGGAAATTTCGATGCAAATGTTGTCATGGTACTCTCAGTCCTACTATGTGCACTCATCTGCTCCTTAGGTTTGAACTCCATCATCAGGTGTGCACTAAGGTGTTCCAATTTCGTAGTGAGTGACTCAGTGGCAACCAACAGCCCTCCAGCAAGAGTTGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGAGTTACTCAGCTGAGCTGAACCTCCCAAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACAAATGGTGACAAGGTGCGCATTTTGCCAAAGTGCAACCACGGGTTCCACGTACGCTGCATTGACATGTGGCTAATTTCACACTCTTCATGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAAAAGATTGTTGGGTGCAGTCAGCAGCAAGCTAGCTCCTCTCAACAACAAGTGTTGCAGGTGCCAGAAACCATTCTCACCATAACGCCACTGGACCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTAGCTAA 681 0.4772 MYSAATSFTSPLHHDLHNFHSRRLLLHSPLNQSAKPPASSHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNSPPARVANTGVKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTNGDKVRILPKCNHGFHVRCIDMWLISHSSCPKCRQCLIETCQKIVGCSQQQASSSQQQVLQVPETILTITPLDPEGLVRNYRELS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01689 226 CDD RING-H2_EL5-like 132 175 - -
Phco7g01689 226 PANTHER RING-H2 FINGER PROTEIN ATL78 16 218 IPR044602 GO:0016567|GO:0016740
Phco7g01689 226 SMART ring_2 133 174 IPR001841 -
Phco7g01689 226 SUPERFAMILY RING/U-box 111 180 - -
Phco7g01689 226 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Phco7g01689 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Phco7g01689 226 FunFam RING-H2 finger protein ATL73 92 180 - -
Phco7g01689 226 Pfam Ring finger domain 132 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01689 Phco-Chr7 16754702 16755382 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01689 7 16754702 16755382 Phco7g01689 7 16754702 16755382 ECH
Phco4g00748 4 5767928 5768587 Phco7g01689 7 16754702 16755382 ECH
Phco4g03055 4 51526542 51527216 Phco7g01689 7 16754702 16755382 PCT