Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03055 ATGTATGCTTCAACTTCCTTTACTACGCAATTGGTCCGTGACCTTCTCATGGACTCAAGCTCAAGAAAGCTACTCCTTCAAGAACCTCTTCATCAAGACTTGGCCAAATCCCCAGATTCCATTAGTTACAACTCAACCGACTCGTATTTCAAAGCTCATGACTTCAACGCAAATGTTGTCATGATACTCGCAGTCCTCCTGTGTGCTGTTATTTGCTCACTCGGCTTGAACTCCATCATAAAGTGTGCCCTGAGGTGCTCAAACGTAGTCATCAACGACCCTTCAAGTATGACCAACAGCCCTTCAAGTGTGAGCTACAGCCCTTCACCACGATTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCAACTGTGAGCTACTCAACTGAGTTGAAACTCCCAGGTTTGGACACAGAGTGTGTAATATGCCTCTCAGAGTTTGTCAATGGTGATAAGGTACGCATTTTGCCAAAATGCAACCATGGTTTCCACGTTCGCTGCATTGACAAATGGCTAAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAATGCAAGAAAATTGTTGGATCCCAACCACTAGTTCCAGAAACCATTATAAGGATCCAACCACTTGAACCTGAAGGTTTGGAGCGTAACTATAGGGAAGTATGCTAG 675 0.4504 MYASTSFTTQLVRDLLMDSSSRKLLLQEPLHQDLAKSPDSISYNSTDSYFKAHDFNANVVMILAVLLCAVICSLGLNSIIKCALRCSNVVINDPSSMTNSPSSVSYSPSPRLANTGIKKKALKTFPTVSYSTELKLPGLDTECVICLSEFVNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIECKKIVGSQPLVPETIIRIQPLEPEGLERNYREVC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03055 224 CDD RING-H2_EL5-like 142 185 - -
Phco4g03055 224 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Phco4g03055 224 SUPERFAMILY RING/U-box 121 191 - -
Phco4g03055 224 FunFam RING-H2 finger protein ATL73 105 190 - -
Phco4g03055 224 Pfam Ring finger domain 142 185 IPR001841 -
Phco4g03055 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 189 IPR013083 -
Phco4g03055 224 SMART ring_2 143 184 IPR001841 -
Phco4g03055 224 PANTHER RING-H2 FINGER PROTEIN ATL78 18 215 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03055 Phco-Chr4 51526542 51527216 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03055 4 51526542 51527216 Phco7g01689 7 16754702 16755382 PCT