Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02459 ATGTGGCCATTCAAGAGGAAGGGGGCTTCTGGGTTTTCATCATCATCCACTGCAGAGCAAGTCACTGAAGGTCTTGATGGAACTGGTCTCACTGCCATTGTTACAGGAGCATCCAGTGGTATTGGCACTGAGACTACACGTGTACTTGCTTTGCGAGGTGTCCATGTGATTATGGGTGTGAGAAATATGATTGCTGCCAAAGATGTCAAAGAAACAATACTTAAGGAGATTCCCTCTGCAAAAGTTGATACCTTGGAGTTAGATCTCAGTTCAATGGATTCTGTCAATAAATTTGCATCAGATTTTAAGTCTTCTGGACTTCCATTGAACATCTTGATAAACAACGCAGGAATTATGGCATGCCCTTTCAAGCTCTCTGCAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTATTGACAAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTGAAACTAAGAAAGAAGGAAGAATTGTTAATGTCTCTTCTGAAGCTCATCGATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGATAAGTCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACGTTTTACATGCAAATGAACTTGCAAGACGTCTCAAGGAAGATGGGGTGGAGATTTCTGCAAATTCGCTTCATCCTGGAACAATTACCACCAATCTTTTCCGTCATACTGCAGTGAACGGTATAATTAATGCTATTGGTAGACTCGTGTGTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGCAATTATTTTTCAGACAGTAATGTGGCCAAACCAACCTCACAGGGTACTGACGCTGATTTGGCCAAGAAACTTTGGGATTTTAGCTTGAATTTGACCAAGTAA 939 0.4089 MWPFKRKGASGFSSSSTAEQVTEGLDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMIAAKDVKETILKEIPSAKVDTLELDLSSMDSVNKFASDFKSSGLPLNILINNAGIMACPFKLSADKIELQFATNHIGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHRFAYSEGIRFDKINDKSSYNNWRAYGQSKLANVLHANELARRLKEDGVEISANSLHPGTITTNLFRHTAVNGIINAIGRLVCKNVQQGAATTCYVALHPQVKGISGNYFSDSNVAKPTSQGTDADLAKKLWDFSLNLTK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02459 312 CDD retinol-DH_like_SDR_c_like 29 304 - -
Phco6g02459 312 PANTHER RETINOL DEHYDROGENASE 10 311 - -
Phco6g02459 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Phco6g02459 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Phco6g02459 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Phco6g02459 312 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Phco6g02459 312 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Phco6g02459 312 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Phco6g02459 312 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Phco6g02459 312 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Phco6g02459 312 Gene3D - 22 312 - -
Phco6g02459 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 288 IPR036291 -
Phco6g02459 312 Pfam short chain dehydrogenase 31 177 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02459 Phco-Chr6 45985200 45990087 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02459 6 45985200 45990087 Phco6g02459 6 45985200 45990087 ECH
Phco5g00716 5 7785838 7792985 Phco6g02459 6 45985200 45990087 PCT
Phco6g02459 6 45985200 45990087 Phco5g00715 5 7767179 7775298 PCT