Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00716 ATGCCTATTTATTTGTTAGGATCATTCTTCTTTTCTGCCTGCAACAAAGTAAAGATGTGGTGGCTGTTTGGGAGAAGAAAAGGTTCTGGTTTTTCATCTTCTTCTACTGCTGAGGAAGTTACTGAAGGGATCGATGGCACTGCACTTACTGCTATTGTCACAGGTGCAACCAGTGGTATTGGTGCTGAGGCTACTCGTGTACTTGCCATGCGTGGTGTTCATGTGATTATGGGGGTAAGGAATTTGGTTGCTGCAAAAGATATAAAGAAAGAAATACTTCAGAAGATTCCTACTGCTAAAGTTGATTACATGGAGTTAGACCTTAGTTCAATGACATCTGTTCGAAACTTTGCATCAGAGTTCATTTCATCTGCTCTTCCATTGAACATTTTGATAAACAATGCAGGAATTTTCGCAACCCCTTTCACTCTCTCTGCAGACAACATTGAACTGCAATTTGCCACAAATCACATGGGTCATTTCCTATTAACAAATCTATTGTTGGATGTTATGAAGAAAACAACTCATGAAAGTAAGAAACAAGGAAGAATTGTTAATATTTCCTCCATACTTCATCAATTACCAAATCGTGGAGGAATTCGTTTTGATCAAATTAATGATCCATCAAGTTATCATAAGTGGCTTGCATATGGACAATCAAAGTTGGCTAACATTTTACATGCCAATGAACTTGCAAGACGTCTTAAGGAAGAAGGGGTAGATATTACAGCTAATTCTCTTCATCCGGGAGCTATTGTCACCAAAATTTTTCGTCACACCAATATATTGTCTGGTTTAATTAATACGGTGGGTAGACTTGTGTTTAAAAACGTCCAGCAGGGAGCTGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAGGGAAATCAGTGGTCAGTATTTTGAAGATTGTAATGTTTCCACAGCAAACTCACACGCAAGGGACATTGATTTGGCCAAGAAATTATGGGATTTTAGCTTAAACTTGATCAAGTAG 999 0.3844 MPIYLLGSFFFSACNKVKMWWLFGRRKGSGFSSSSTAEEVTEGIDGTALTAIVTGATSGIGAEATRVLAMRGVHVIMGVRNLVAAKDIKKEILQKIPTAKVDYMELDLSSMTSVRNFASEFISSALPLNILINNAGIFATPFTLSADNIELQFATNHMGHFLLTNLLLDVMKKTTHESKKQGRIVNISSILHQLPNRGGIRFDQINDPSSYHKWLAYGQSKLANILHANELARRLKEEGVDITANSLHPGAIVTKIFRHTNILSGLINTVGRLVFKNVQQGAATTCYVALHPQVREISGQYFEDCNVSTANSHARDIDLAKKLWDFSLNLIK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00716 332 PRINTS Glucose/ribitol dehydrogenase family signature 50 67 IPR002347 -
Phco5g00716 332 PRINTS Glucose/ribitol dehydrogenase family signature 176 192 IPR002347 -
Phco5g00716 332 PRINTS Glucose/ribitol dehydrogenase family signature 217 236 IPR002347 -
Phco5g00716 332 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Phco5g00716 332 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Phco5g00716 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 217 236 IPR002347 -
Phco5g00716 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 190 IPR002347 -
Phco5g00716 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Phco5g00716 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 309 IPR036291 -
Phco5g00716 332 Gene3D - 45 332 - -
Phco5g00716 332 Pfam short chain dehydrogenase 50 196 IPR002347 -
Phco5g00716 332 CDD retinol-DH_like_SDR_c_like 50 324 - -
Phco5g00716 332 PANTHER RETINOL DEHYDROGENASE 29 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00716 Phco-Chr5 7785838 7792985 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00716 5 7785838 7792985 Phco6g02459 6 45985200 45990087 PCT