Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00715 ATGTGTTCTTCTGGGTTTTCATCATCTTCCACTGCAGAAGAAGTTACTCAAGGGATTCATGGGGATGGTCTCACTGCAATTGTCACAGGAACAACACATGGTATTGGCATTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTCCACGTGATTATGGCAGTGAGAAATGTGGTTGCTGCAAAAGCTGTCAAAGAAGCAATACTCAAAGAGATTCACACAGCCAAAGTTGATGTCAAGGAGTTAGATCTTAGTTCAATGGCATCTGTTAGAAAATTTGCATCAGAGTTCACTTCATCTAGTCTTCCATTGAACATCTTGATAAACAATGCAGGGATAACTGCAACCCCTTTCTCCTTGTCCAAAGACAACATCGAACTACAATTTGCAACAAATCACTTGGGTCATTTTCTTTTAACACATCTTTTATTGGACACTATGAAGAAAACTGCAAATGTAAGCAAGAGAGAAGGAAGAATTGTGAATGTCTCCTCTGATGGTCACCAATATACATATCCTGAAGGAATTCGTTTTGATAAAATTAATGATGAATCAAGTTTCCAGTTGTGGCATGCATATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAAGGAACTTGCAAGACGTTTTAAAGAAGATAGGGTAGATATTACAGCAAATTCTCTTCATCCAGGAGCTATTATTACCAATATTTATAAGCCAGAGATTAGTGGCGCTGTGCCAACAGATTTAATTAATATGCTTGGCAATTATGCGATGAAAAGTATTCAGCAGGGAGCAGCAACAACATGCTACGTAGCGTTGCATCCACAAGTAAAGGGAATTAGTGGCGAGTACTTTTCAGATAATAATGTGGCTAAGGCAAGCTCACTGGCAAAGGACACTGATTTGGCTAAGAAACTCTGGGATTTCAGCATGAAAATAATTTATCAGAACACCCATGAAGCATTGTGA 954 0.392 MCSSGFSSSSTAEEVTQGIHGDGLTAIVTGTTHGIGIETARVLALRGVHVIMAVRNVVAAKAVKEAILKEIHTAKVDVKELDLSSMASVRKFASEFTSSSLPLNILINNAGITATPFSLSKDNIELQFATNHLGHFLLTHLLLDTMKKTANVSKREGRIVNVSSDGHQYTYPEGIRFDKINDESSFQLWHAYGQSKLANILHAKELARRFKEDRVDITANSLHPGAIITNIYKPEISGAVPTDLINMLGNYAMKSIQQGAATTCYVALHPQVKGISGEYFSDNNVAKASSLAKDTDLAKKLWDFSMKIIYQNTHEAL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00715 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 286 IPR036291 -
Phco5g00715 317 CDD retinol-DH_like_SDR_c_like 23 302 - -
Phco5g00715 317 PANTHER RETINOL DEHYDROGENASE 4 309 - -
Phco5g00715 317 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Phco5g00715 317 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Phco5g00715 317 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Phco5g00715 317 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Phco5g00715 317 PRINTS Glucose/ribitol dehydrogenase family signature 192 211 IPR002347 -
Phco5g00715 317 Gene3D - 20 313 - -
Phco5g00715 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 IPR002347 -
Phco5g00715 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 IPR002347 -
Phco5g00715 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Phco5g00715 317 Pfam short chain dehydrogenase 25 173 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00715 Phco-Chr5 7767179 7775298 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02459 6 45985200 45990087 Phco5g00715 5 7767179 7775298 PCT