Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01412 ATGAGGCCTTCTCCTATTTTACCACTAGCATTGTCCTTATACTTTCTTACTTTGTTTCTTCCCACCCAAGCTAGGTACCATTTCCATAAACACAAACACTCATATTATCATAATGCACCTGAAATTTCACCATCTCCTTCTCCACTGCCTGGACCTTCTAGCGCCCCTGATGAAGCTCCTTCTCCTAGCCCCACTGTTGATGAGAACTACCACAACACATCTAATAACTTGTTTGATATTCGAGCATTTGGGGCCATCGGAGATGGAGCAACTGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCTGCGGTTAAAGTTATCCTTGTTCCCCACAGTCTCTCCTTCATTATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGAGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCCGATGGACCTGAGTCTTGGCCAAAGAACAACAGTAGGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGATTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCTTGTAAGCCTCATAAGGGACCCCATGGGACAACATCTCCAGGACCTTGCGACAGCCCTGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACAGTACAAGGACTTAAAATCAAGAACAGCCCCCAATTCCACTTCAGATTTGATGGCTGCGAAAGCGTCCACGTGGAATCAATCTACATAACAGCTCCAGCACTCAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTCAAAATATACAATTCGGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATAACATGTGGACCTGGTCATGGTATAAGTATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATAACGGTGAGGGACTCGGTTATAAAAGTATCAGATAACGGGGTTAGAATCAAGACATGGCAAGGTGGCTCAGGATCAGTATCAGGAGTGACATTTACTAATATTCACATGGAAAGTGTAAGAAACCCCATTATAATTGACCAGTTTTACTGCCTCGGTAAGGATTGCTCCAACAAGACCTCTGCAGTCTTTGTATCGAATATATCTTACACAAACATTAAGGGAACATATGATACAAGGCACCCTCCAATGCATTTTGCTTGCAGTGATTCTGTCCCATGCACCAACTTGACCCTCTCAGATATTGAACTTCTTCCATCTGAAGGAGACATAGTGCTTGATCCTTACTGCTGGAGTGCCTATGGAATCTCTCAGACACTAACCATTCCCCCAGTCTCTTGCTTGCTTGAAGGCCTCCCTCAGTCCATTTCAGGAAATGACATAGATCATTGCTGA 1425 0.4379 MRPSPILPLALSLYFLTLFLPTQARYHFHKHKHSYYHNAPEISPSPSPLPGPSSAPDEAPSPSPTVDENYHNTSNNLFDIRAFGAIGDGATDDTESFKMAWDTACQSESAVKVILVPHSLSFIIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSRRQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLTVQGLKIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFTNIHMESVRNPIIIDQFYCLGKDCSNKTSAVFVSNISYTNIKGTYDTRHPPMHFACSDSVPCTNLTLSDIELLPSEGDIVLDPYCWSAYGISQTLTIPPVSCLLEGLPQSISGNDIDHC 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01412 474 MobiDBLite consensus disorder prediction 39 70 - -
Phco6g01412 474 ProSitePatterns Polygalacturonase active site. 298 311 IPR000743 GO:0004650|GO:0005975
Phco6g01412 474 MobiDBLite consensus disorder prediction 43 59 - -
Phco6g01412 474 FunFam Polygalacturonase At1g48100 family 66 461 - -
Phco6g01412 474 Gene3D - 63 459 IPR012334 -
Phco6g01412 474 PANTHER - 76 445 - -
Phco6g01412 474 Pfam Glycosyl hydrolases family 28 109 427 IPR000743 GO:0004650|GO:0005975
Phco6g01412 474 SUPERFAMILY Pectin lyase-like 75 462 IPR011050 -
Phco6g01412 474 SMART pbh1 291 311 IPR006626 -
Phco6g01412 474 SMART pbh1 268 289 IPR006626 -
Phco6g01412 474 SMART pbh1 321 342 IPR006626 -
Phco6g01412 474 SMART pbh1 241 267 IPR006626 -
Phco6g01412 474 SMART pbh1 350 371 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01412 Phco-Chr6 14264790 14266752 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01412 6 14264790 14266752 Phco6g01412 6 14264790 14266752 ECH
Phco2g02477 2 54802786 54805030 Phco6g01412 6 14264790 14266752 ECH
Phco11g01130 11 8393050 8395620 Phco6g01412 6 14264790 14266752 ECH
Phco2g02477 2 54802786 54805030 Phco6g01412 6 14264790 14266752 PCT