Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02477 ATGAAGCATTCTCCTATTTTACCACTAGCATTCTCTATATTTTTCCTTACTTTATTTCTTCTGGTCCAAGCTAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAGTCTTCTAAACATTCGAGTCCTGCACGTCCTAGCCCTCCTCATAATGAGAACAATAACAATGCTTCTGGCGTTTTGGATGTACGAACATTTGGAGCAATAGGAGATGGAAAAACAGATGATACAGAGTCATTTAAGATGGCATGGGACACTGCTTGCCAAAGTGAATCAGCAGTTAATGCTATTCTTGTACCTCAAGGTTTCTCTTTCCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAAGTGTCATGGTGTTGAAGGTTGATGGCACTCTTATGCCACCTGATGGACCCGAATCTTGGCCAAAGAACAACAGTAGGCACCAATGGTTGGTGTTTTATAGAATCAATGGAATGTCAATGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCCTGTAAGCCTCACAAGGGACCTAATGGGACAACACTCCCTGGACCCTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGCTCCAACTTAACTGTGCAAGGACTAAGGGTAAAGAACAGTCCCCAGTTTCATTTCAGATTTGATGGCTGCAAAAACGTCCACATTGAATCAATCTACATAACATCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACAAATGATGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGATTGTGTTTCCATTGGATCCGGCTGCAATGATGTCGATATTAAGAACATTACATGTGGCCCTGGTCATGGAATTAGCATTGGTAGTCTGGGGAATCACAACTCTCGAGCCTGTGTTTCAAACATTATGGTGAGAGACTCACTTATAAAAGTGACAGAAAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTGTCTGGAGTGACATTCAACAATATTCACATGGTTAGTGTAAGAAATCCCATCATAATTGACCAATTCTACTGCCTCACTAAGGATTGCACCAACAAGAGCTCTGCAGTATCTGTATCAAATATTGTTTACACAAACATAAAGGGGACTTATGATATAAGGAGCCCGCCTATGCGTTTTTCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATTGAGCTTCTTCCAGCTCAAGGAGACATAGTGCATGACCCTTTCTGTTGGAATGCATATGGTGATTTGGAGACACTAACCATTCCACCAGTCTCATGCTTGCTCGAGGGCACTCCTCAATCCGTGTTAGACTTTGACATAACTCGTTGCTGA 1383 0.4165 MKHSPILPLAFSIFFLTLFLLVQARHHSHTKHKHSHSHKSSKHSSPARPSPPHNENNNNASGVLDVRTFGAIGDGKTDDTESFKMAWDTACQSESAVNAILVPQGFSFLIQSTIFTGPCQSVMVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSMEGSGLIDGRGEKWWDLPCKPHKGPNGTTLPGPCDSPIAIRFFMSSNLTVQGLRVKNSPQFHFRFDGCKNVHIESIYITSPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIMVRDSLIKVTENGVRIKTWQGGSGSVSGVTFNNIHMVSVRNPIIIDQFYCLTKDCTNKSSAVSVSNIVYTNIKGTYDIRSPPMRFSCSDSVPCTNLTLSEIELLPAQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDFDITRC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02477 460 Gene3D - 48 446 IPR012334 -
Phco2g02477 460 PANTHER - 63 431 - -
Phco2g02477 460 SMART pbh1 227 253 IPR006626 -
Phco2g02477 460 SMART pbh1 277 297 IPR006626 -
Phco2g02477 460 SMART pbh1 254 275 IPR006626 -
Phco2g02477 460 SMART pbh1 307 328 IPR006626 -
Phco2g02477 460 SMART pbh1 336 357 IPR006626 -
Phco2g02477 460 MobiDBLite consensus disorder prediction 29 64 - -
Phco2g02477 460 FunFam Polygalacturonase At1g48100 family 52 447 - -
Phco2g02477 460 MobiDBLite consensus disorder prediction 29 43 - -
Phco2g02477 460 Pfam Glycosyl hydrolases family 28 94 413 IPR000743 GO:0004650|GO:0005975
Phco2g02477 460 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Phco2g02477 460 MobiDBLite consensus disorder prediction 44 64 - -
Phco2g02477 460 SUPERFAMILY Pectin lyase-like 62 450 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02477 Phco-Chr2 54802786 54805030 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02477 2 54802786 54805030 Phco2g02477 2 54802786 54805030 ECH
Phco2g02477 2 54802786 54805030 Phco6g01412 6 14264790 14266752 ECH
Phco11g01130 11 8393050 8395620 Phco2g02477 2 54802786 54805030 ECH
Phco2g02477 2 54802786 54805030 Phco6g01412 6 14264790 14266752 PCT