Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01130 ATGAGTCTCATTCGCGGGTCTTTTATCCTATGGATTGCCATGATTCTTTTTATCCATAATTGGGATAATGTGGAAGGAAGGTACCACTATCACAAGGGGCAGAAGAAAAGTCCTCCTGCTGAGTCCCCTACACCAGAGGAACCTTCTTCACCTCCTTCCATTTCCCCTGGTGTTCCCTCTGACCCTTATCCCAGTGATCCTGGGGATTCCCCATCAAACTGCATTTTCGATGTAAGATCCTTTGGGGCAGTTGGAGATGGTTCAGCTGATGACACAGAAGCATTCGTGGCAGCATGGAAAGCAGCTTGTGCAGTCGAGTCAGGGGTTGTTCTTGTTCCAGAAAATTACTGCTTCAAAATAACTTCAACTATCTTTACAGGTCCATGCAAGCCTGGAATAGTATTTCAAGTGGATGGTACTCTCATGGCACCTGATGGACCAGAATCTTGGCCTAAGGAAGATAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGCAATGGGGAACAGTGGTGGGATCTTCCTTGCAAACCTCACCGGGGTCCCGATGAAAAAACTGTATCAGGACCATGTGATAGCCCCACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGCTGAGTGGGGTGAAAATTCAAAACAGTCCAATGTTTCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATAGACAAATTGTCAATTTCTTCTCCTAAACTCAGTCCAAATACTGACGGCATCCACTTAGGAAATACAAAGGGTGTTGGGATATATAACTCCATGATAAGCAATGGTGATGATTGCATCTCGATTGGACCCGGGTGCTCAGACGTGGACATAGAGGGTGTTACTTGTGCTCCTACCCATGGCATTAGCATTGGAAGCCTCGGAGTGCACAATTCCCAGGCATGTGTCTCAAACTTAACTGTTCGCAACACCATCATAAAGGAATCAGACAATGGCCTGAGGATCAAGACATGGCAAGGTGGAACGGGCTCAGTGAGTGGCCTAAGATTTGAAAACATCCAAATGGAGAATGTGAGGAACTGCATCATCATTGACCAGTACTACTGCTTGTCCAAGGAGTGTCTGAACCAAACTTCAGCAGTGCATGTAAACAATGTGATATATAGGAACATAAAGGGTACTTATGATGTGAGAACTCCTCCTATACACTTTGCTTGCAGTGACACTGTGGCATGCACCAACATAACACTCTCTGAGATTGAGCTTTTGCCATACGAAGGGCAGTTACTGGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTGATTGCTTAAGAGAAGGTGAACCTGATACAGTTGTGGAGCTCTCTGCCTATGAATGTAGGAATTAA 1419 0.4517 MSLIRGSFILWIAMILFIHNWDNVEGRYHYHKGQKKSPPAESPTPEEPSSPPSISPGVPSDPYPSDPGDSPSNCIFDVRSFGAVGDGSADDTEAFVAAWKAACAVESGVVLVPENYCFKITSTIFTGPCKPGIVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDEKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVSGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNNVIYRNIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGQLLDDPFCWNAYGTQETMTIPPLDCLREGEPDTVVELSAYECRN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01130 472 PANTHER - 74 442 - -
Phco11g01130 472 MobiDBLite consensus disorder prediction 30 69 - -
Phco11g01130 472 SUPERFAMILY Pectin lyase-like 73 469 IPR011050 -
Phco11g01130 472 MobiDBLite consensus disorder prediction 41 66 - -
Phco11g01130 472 Gene3D - 68 460 IPR012334 -
Phco11g01130 472 SMART pbh1 346 367 IPR006626 -
Phco11g01130 472 SMART pbh1 317 338 IPR006626 -
Phco11g01130 472 SMART pbh1 287 307 IPR006626 -
Phco11g01130 472 SMART pbh1 264 285 IPR006626 -
Phco11g01130 472 SMART pbh1 237 263 IPR006626 -
Phco11g01130 472 Pfam Glycosyl hydrolases family 28 110 423 IPR000743 GO:0004650|GO:0005975
Phco11g01130 472 FunFam Polygalacturonase At1g48100 family 64 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01130 Phco-Chr11 8393050 8395620 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01130 11 8393050 8395620 Phco11g01130 11 8393050 8395620 ECH
Phco11g01130 11 8393050 8395620 Phco2g02477 2 54802786 54805030 ECH
Phco11g01130 11 8393050 8395620 Phco6g01412 6 14264790 14266752 ECH