Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01221 ATGAGAAGAAGAAGGAAAGAAATAAAAGTTGTTAAGATTGTCGAAAATCCATGGTTTACACAACACATCCCTTGCAAAGCACGAAGGCAACAGAACACAACAAAACAGAACAAAACACAATTCAACTTCCCTGGTATTGGACCTACCTCACCTTCCTCCAATTTTCAACTCCACACAAAACCAAAACCTTCCTTCAAAATCAAACACTTCAATTTCTACCATAATCGAATCGATTCGATTCCATTCCAAATAATGTCCCACACACCACCGCAAACCCTCGATTCCGAAGAGGCATCACCCGCCACCGCCGCCCAAACCCCCGACTCCCAAGCCGCCACGCTCCTCCACATCTCCTTCAACCAGGATTCCGGATGCTTCGCCGCGGCCACGGACCGCGGCTTCCGCATCTACAACTGCGACCCCTTCCGGGAGATCTTCCGCCGTGATTTCGGCCCCGGCGGCGGCGTTGGCCTTGTCCACATGCTCTTCCGCTGCAACATACTCGCCTTCGTCGGCGGCGGCGCCGACCCCCGGTACCCCCCCAACAAGGTTATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTCTCCTTCCGGTCCGAGGTGAAGGGCGTCCGTCTCCGGCGCGACCGCATCGTGGTGGTTCTGGCGCACAAGATCTTTGTGTACAACTTCTCCGATCTCAAGGTGCTGCACCAAATCGAGACCATCGCCAACCCTAAGGGCCTCTGCGACCTCTCCCACGTTTCCGCCACCATGGTCCTCGTCTGCCCCGGCTTGCAGAAGGGGCAGGTCAGGGTTGAGCACTACGCCTCCAAGAGGACCAAGTTCATCATGGCGCACGATTCCCGAATTGCGTGTTTTGCTCTCACGCATGATGGCAGGTTGCTCGCCACCGCCAGCTCCAAGGGCACCCTCATCAGACTCTTCAATACCCTCGATGGTTCATTGCTTCAAGAGGTAAGGAGGGGTGCAGACCGAGCAGAGATATACAGCCTTGCATTCTCTCCTACTGCACAGTGGCTGGCTGTCTCAAGTGACAAGGGGACCGTTCATGTTTTCAACCTGAAGGTTGATTCTGGACTGATGGGGCATGACAGATCGCACAGTACTTCTTCTGAGGCTAATCCTGCTAGCCCTACTGCTGTTTCATCTCTTTCATTTATTAAAGGTGTGCTACCTAAGTATTTTAGCTCGGAGTGGTCTGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAGTATATTGTTGCATTTGGCCATCAAAAGAATACAATTGTAATACTAGGCATGGATGGCAGCTTCTACCGATGTCAGTTTGATTCTGCGAACGGTGGAGAGATGACCCAACTTGAATATTACAATTTCCTAAAGGCAGAAGAAACATTCTAG 1395 0.5226 MRRRRKEIKVVKIVENPWFTQHIPCKARRQQNTTKQNKTQFNFPGIGPTSPSSNFQLHTKPKPSFKIKHFNFYHNRIDSIPFQIMSHTPPQTLDSEEASPATAAQTPDSQAATLLHISFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGADPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFSDLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTHDGRLLATASSKGTLIRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLMGHDRSHSTSSEANPASPTAVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGSFYRCQFDSANGGEMTQLEYYNFLKAEETF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01221 464 Gene3D - 111 444 IPR015943 GO:0005515
Phco6g01221 464 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 108 457 - -
Phco6g01221 464 Pfam WD domain, G-beta repeat 326 357 IPR001680 GO:0005515
Phco6g01221 464 SUPERFAMILY WD40 repeat-like 113 359 IPR036322 GO:0005515
Phco6g01221 464 FunFam Autophagy-related protein 18a isoform A 112 443 - -
Phco6g01221 464 SMART WD40_4 316 357 IPR001680 GO:0005515
Phco6g01221 464 SMART WD40_4 100 138 IPR001680 GO:0005515
Phco6g01221 464 SMART WD40_4 273 313 IPR001680 GO:0005515
Phco6g01221 464 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01221 Phco-Chr6 12217561 12223587 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01221 6 12217561 12223587 Phco6g01221 6 12217561 12223587 ECH
Phco2g02352 2 53918655 53921231 Phco6g01221 6 12217561 12223587 ECH
Phco2g01724 2 47547631 47549680 Phco6g01221 6 12217561 12223587 PCT