Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02352 ATGGCTACGCTTTCTGCATGCGCTTCTCCTCCATGGCCAGACCCTAATCCCACCACCTCCCCCAATTCAAACCCAAACCCTAATTTCCTCCCCGACCAGTCCCAAACACTCGACTTCGAATCCCTCATGCCTACGCAACCGAAATCGCCACCGCAATACCGCTCCCCCGCCGCATCGCCGCCGGGATTATCCCCAGAGACGCCCCCGTCGGTGCTCCACGTCGCCTTCAACCAGGACCAGGCTTGCTTCTCCGCCGCCACCGACAGCGGTTTCCGTATCTATAATTGCAACCCCTTCAGCGAACAATTCCGCCGCGAGTTCGACGGCGGCGGAATCGGCCACGTCGAGATGCTCTTCCGCTGCAACATCATCGCCCTTGTCGGCGGCGGACCCCATCCCAAGTACTCGCCCAACAAGGTCATGATCTGGGATGACCACGAGGGCTGCTGCATCGGTGACCTATCACCCCGAGCCGCCGTCCGCAGCGTTCGGCTGCGCCGCGATCGGATTATCGTTGCCATCGAGCAGAAGATTCTGGTCTATAACTTCCAGGACCTCAGTCTCTTGCACCAGATTGAGACCTATCCCAATCCTAAAGGTCTCTGCGCGGTTTCGCAATTGTCGGATTCGCTCGTTCTCGCGTGCCCTGGGTTGCAGAAGGGTCAGATTCGTGTTGAGCACTACGCGCAGAAGAAGACAAAGTTCATATCTGCTCATGATTCCAGAATTGCTTGTTTCGCTCTAACGCTTGATGGGCAGTTCATTGCTACCGCCAGCACCAAGGGCACGCTGATTCGAATTTTCGACACTGTTCAGGGCACGCTTCTTCAGGAAGTGAGAAGGGGTGCAAATGTTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCGGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTTTTCAGCCTTAAGGTTAATTCTAGCATCCCCGAGCAAGAAAAGCCTCAAAATTCATCCAATTCAGATGCTGCCATTACCCCATCTAACTCATCTCGCTCCTTCACTAAATTTAAAGGAGTGTTACCCAAGTATTTCAATTCCGAGTGGTCAGTTGCTCAGTTTCGCTTACAAGAGGGCTCTCATTACACAGTTGCCTTTGGTCACGAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGTTTCTATAGATGCCAATTTGATCCAGTACATGGAGGGGAGATGACTCAGCTGGAGTATCATAACTTTTTAAAGCCAGAACCAGAAACTGCCTTGTGA 1272 0.5236 MATLSACASPPWPDPNPTTSPNSNPNPNFLPDQSQTLDFESLMPTQPKSPPQYRSPAASPPGLSPETPPSVLHVAFNQDQACFSAATDSGFRIYNCNPFSEQFRREFDGGGIGHVEMLFRCNIIALVGGGPHPKYSPNKVMIWDDHEGCCIGDLSPRAAVRSVRLRRDRIIVAIEQKILVYNFQDLSLLHQIETYPNPKGLCAVSQLSDSLVLACPGLQKGQIRVEHYAQKKTKFISAHDSRIACFALTLDGQFIATASTKGTLIRIFDTVQGTLLQEVRRGANVAEIYSLAFSSTARWLAVSSDKGTVHVFSLKVNSSIPEQEKPQNSSNSDAAITPSNSSRSFTKFKGVLPKYFNSEWSVAQFRLQEGSHYTVAFGHEKNTVIILGMDGSFYRCQFDPVHGGEMTQLEYHNFLKPEPETAL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02352 423 SUPERFAMILY WD40 repeat-like 66 327 IPR036322 GO:0005515
Phco2g02352 423 MobiDBLite consensus disorder prediction 321 341 - -
Phco2g02352 423 FunFam Autophagy-related protein 18a isoform A 69 400 - -
Phco2g02352 423 MobiDBLite consensus disorder prediction 1 70 - -
Phco2g02352 423 MobiDBLite consensus disorder prediction 25 48 - -
Phco2g02352 423 MobiDBLite consensus disorder prediction 49 67 - -
Phco2g02352 423 MobiDBLite consensus disorder prediction 10 24 - -
Phco2g02352 423 Pfam WD domain, G-beta repeat 286 312 IPR001680 GO:0005515
Phco2g02352 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Phco2g02352 423 SMART WD40_4 61 95 IPR001680 GO:0005515
Phco2g02352 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Phco2g02352 423 Gene3D - 59 395 IPR015943 GO:0005515
Phco2g02352 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 67 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02352 Phco-Chr2 53918655 53921231 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02352 2 53918655 53921231 Phco2g02352 2 53918655 53921231 ECH
Phco2g02352 2 53918655 53921231 Phco6g01221 6 12217561 12223587 ECH