Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01846 ATGGATTTTTATTCTTCATTTTCATACCAAAGGCTAGAATCCCATCTCAACTCATGGGAAGAGTTGTTTTCGTTCAACAACCTGCCCTTGAATAATGCAACAAATGAATCTTTGGACTCCAACTCCTCATCCTCCAATGCAGAAATGGAGTTACAAGAGCACACCTCTGATACTACATATGATGGTTCAAATCCACAGCCTCTATCTGTAGCCCCAACAAAGAAGGAGAAGAGACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATGTGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACACTGCAGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCCGTACAAGTGGTGATGGAGTCCCTCCAAGACATGGGTTTCAAGGCATTGAGAAATAGTGTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACGAAATCTAGGGCTAGCAGGAATGGTGGTGAAAAGGTTAAAAGGGGTTGCGGCAAAGGGAAATTTGATCCTACAACTGAAACTGTGTTGGTGTTGGAGGATTTGGGTGCTGAATACCTAGAGAAACTTTTGACCTTCACTTCCCCTGGTAACCTTGGAAAGAAAGGTGGTCCACTCTGCTTAAGAAATGACCATGCTCTTAGACTAAATCGTATTCCACCAAAAGCCTGCACACAAAGCATAAAAATACGTAACTGGATCTGCACTAAACCAGAAACAAGACCTGCACCCCTTCTACTTAGCATCACAATGATCTGCTTTGGATTCTTCAAGAAGCCTGCGGCATCTACAGAATGCCCAGCACCCTCATCCTTATCTTTACTATGCCTCATGTTCTGCTTACGACCTTTCCCACACCACAGGCTCCCTTCCAAAAAGAACTGTCAACAATTCTCTACTTCTAAAGCCTCTGCACTGCTCTAG 993 0.4391 MDFYSSFSYQRLESHLNSWEELFSFNNLPLNNATNESLDSNSSSSNAEMELQEHTSDTTYDGSNPQPLSVAPTKKEKRPYRGVRRRPWGKCAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSVQVVMESLQDMGFKALRNSVSPLLELKRMHVMRTKSRASRNGGEKVKRGCGKGKFDPTTETVLVLEDLGAEYLEKLLTFTSPGNLGKKGGPLCLRNDHALRLNRIPPKACTQSIKIRNWICTKPETRPAPLLLSITMICFGFFKKPAASTECPAPSSLSLLCLMFCLRPFPHHRLPSKKNCQQFSTSKASALL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01846 330 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Phco2g01846 330 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Phco2g01846 330 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Phco2g01846 330 MobiDBLite consensus disorder prediction 35 83 - -
Phco2g01846 330 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Phco2g01846 330 MobiDBLite consensus disorder prediction 35 70 - -
Phco2g01846 330 CDD AP2 80 136 IPR001471 GO:0003700|GO:0006355
Phco2g01846 330 Gene3D AP2/ERF domain 79 140 IPR036955 GO:0003700|GO:0006355
Phco2g01846 330 Pfam AP2 domain 80 125 IPR001471 GO:0003700|GO:0006355
Phco2g01846 330 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Phco2g01846 330 PANTHER DNA-BINDING DOMAIN 45 214 IPR044808 GO:0003700|GO:0009873
Phco2g01846 330 FunFam Ethylene-responsive transcription factor 2 78 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01846 Phco-Chr2 49011219 49014827 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01846 AP2 9.9e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01846 2 49011219 49014827 Phco2g01846 2 49011219 49014827 ECH
Phco2g01846 2 49011219 49014827 Phco6g00053 6 537873 538505 PCT
Phco6g01043 6 10362704 10363342 Phco2g01846 2 49011219 49014827 PCT