Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00837 ATGTATAACTGCTTCACTTTGTCACATTTCTTCAAATTGTTGTTTGAGGTAAGTTTTCGATTAGGGTTTTTTGCTTGGTTGCTTCTCGTACTCCATAACCTCCGAAGCTGTGCACCGAAGAACAAAGCCATGGGGAAGACACGTGGAATGGGAGCTGCTCGCAAGCTCAAGTCCCATCGCAGGAGGCAAAGGTGGGCTGATAAGTCATACAAGAAATCCCATCTTGGGAATGAATGGAAGAAACCCTTTGCGGGTTCATCCCACGCAAAGGGAATTGTTCTCGAAAAGATAGGTATTGAGGCTAAACAGCCCAACTCTGCTATTCGAAAGTGTGCCAGGGTTCAACTCATTAAAAATGGAAAGAAGATTGCTGCTTTTGTCCCAAATGATGGATGCTTGAACTACATTGAAGAGAATGACGAAGTTTTGATTGCTGGATTTGGACGAAAGGGTCATGCTGTGGGTGATATTCCTGGTGTCAGGTTTAAGGTTGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 558 0.4427 MYNCFTLSHFFKLLFEVSFRLGFFAWLLLVLHNLRSCAPKNKAMGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00837 185 FunFam 40S ribosomal protein S23 68 185 - -
Phco6g00837 185 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 35 185 IPR006032 GO:0003735|GO:0005840|GO:0006412
Phco6g00837 185 ProSitePatterns Ribosomal protein S12 signature. 102 109 IPR006032 GO:0003735|GO:0005840|GO:0006412
Phco6g00837 185 SUPERFAMILY Nucleic acid-binding proteins 63 183 IPR012340 -
Phco6g00837 185 Gene3D - 68 185 IPR012340 -
Phco6g00837 185 Pfam Ribosomal protein S12/S23 74 184 IPR006032 GO:0003735|GO:0005840|GO:0006412
Phco6g00837 185 CDD Ribosomal_S23 69 182 IPR005680 GO:0003735|GO:0006412|GO:0015935
Phco6g00837 185 NCBIfam 30S ribosomal protein S12 49 184 IPR005680 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00837 Phco-Chr6 8240736 8244289 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00837 6 8240736 8244289 Phco6g00837 6 8240736 8244289 ECH
Phco6g00837 6 8240736 8244289 Phco2g02004 2 50740653 50744720 ECH
Phco2g02005 2 50754148 50759239 Phco6g00837 6 8240736 8244289 ECH
Phco2g02005 2 50754148 50759239 Phco6g00837 6 8240736 8244289 PCT