Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00499 ATGACTCTAATGACTCCGCCTCCATTGGATCAGCAGCAACCGCAGGAGCAGCCGCTGGAGCAACCGCAGGAGCAGGATGAGATGCAGGTTCCTTACGGTCCTCAACCTATGGAAGCAGCAGAAAGCACGAGTCAAGTGGCTGCTCCAACTATGGATGATACACCGTCTGCAAAATTCACTTGGACCATTGACAATTTTTCAGAACTTCCTAAAAGAGTCTTTTCTGATGTTTTCTGTGTAGGAGGTTTTAATTGGCGGGTACTTATCTTTTCAAAGGGGAACAGTGTTGACCATCTATCAATGTATGTAGATGTAGCAGATGCAGCTAATTTGCCTTATGGTTGGAGTAAATATGCCCAATTCAGCTTGACAGTTGTCAATCAAATTCATAGTAAATTTTCAATAAGAAAAGAATCTCATCATCAATTCAATGCGCGTGCGTGTGATTGGGGTTTCGCTAATTTCATGCCACTTGATCACTTATATGATCCTGCTAGAGGTTATCTTGTGAATGATACATGCGTAGTTGAGGCTGACATTGCTGTGCGTAAAGATATGGATTGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGGATTAAAAAACCAAGGAGCTACTTGTTATATGAATTCTCTGCTTCAAACACTGTACCACATTTCTTATTTCCGAAAGGCGGTGTACCAGATGCCCACGACTGAAAATGATTCTCCATCAAGGAGCATACCTCTTGCATTACAGAGTTTGTTTTACAAATTGCAGTACAGTGACACTAGTGTAGCAACGAAAGAGTTAACCAAGTCTTTTGGATGGGATACATATGATTCATTCATGCAGCATGATGTCCAAGAACTTAATAGGGTTCTTTGTGAGAAGCTAGAAGACAAAATGAAGGGAACTGTTGTAGAAGGCACTATTCAGAAATTGTTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGAGGATTATAAATCAACAAGAAAGGAGTCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTAAGGATGTGTATGCTTCTTTTGATAAGTATGTGGAAGTGGAACGGCTTGAGGGTGATAACAAATATCATGCCGAGCACCATGGGTTACAGGATGCTAGGAAGGGTGTATTGTTCATCGATTTCCCACCTGTTCTACAGCTTCAATTAAAGCGGTTTGAGTATGATTTTATGCGAGACACTATGGTAAAGATCAATGATCGCTATGAGTTTCCCTTGGAACTAGATCTTGATAGGGATAATGGCAAGTATCTATCTCCTGAAGCAGACAGAAGTATTCGGAATCTTTATTCACTTCACAGTGTTTTGGTTCACAGTAGTGGGGTGAATGGTGGACACTACTATGCTTACATTAGGCCAACATTATCAGATCAGTGGTTTAAGTTTGACGATGAACGAGTAACCAAAGAAGATGCAAAGAGGGCTTTAGAAGAACAGTATGGTGGTGAAGAGGAGTTACCTCATACTAATCCTGGGTTCAACAACTCTTCCTTTAAATTTACAAAATACTCAAATGCATATATGCTTGTCTATGTTCGAGAAAGTGACAAGGATAAAATAATTTGTAATGTGGATGAGAAGAACATTGCTGAACACCTTAGAATGAGATTAAGGAGAGAACAAGAAGAAAAAGATCTGAAGAGGAAGGAGAAGGCTGAGGCTCACTTGTACACCATCATAAAGGTTGCTCGTGATGAAGATCTGCGTGAGCAGATTGGAAATGATATATTCTTTGATCTGGTGGATCATGATAGAGTTCAAAGTTTTCGTATTCAAAAACAAATGCCTTTTGTCATTTTCAAGGAAGAAGTTGCCAAAGAATTTGGTATACCCATCCAGTGTCAACGTTTTTGGTTGTGGGCAAAGCGCCAAAACAACACATACAGGCCAAATAGAGCACTAACACCTCAGGAAGAAGCACAATCAGTTGGACTCTTGAGAGAAGTTTCCAATAAAGCAAATAATGCAGAGCTGAAGTTATTTTTGGAACTTGAAATGGGAAAGGATTTGCAGCCTATTCCTCCTCCTGAGAAGTCAAAAGAGAATCTCTTGCTTTTCTTTAAACTTTATGAACCTTCAAATGAAAGGCTTAGGTATGTTGGACGGCTCTTTGTGATGTTCAGTGGGAAGCCAGTAGATATATTGGTAAAACTAAATGAAATGGCTGGATATGCTCCTGATGAAGAAATAGACATGTTTGAGGAGATAAAATTTGAACCTAATGTCATGTGTGAACGTGTTGACAAGAAATCCACATTCCGTGAGAGTCAGCTTGAAGATGGTGATATTATTTGCTTCCAGAAGTCCCACAAAACTGAAAGCGAAGAGCTATATCGCTATCCAGATGTTCCTTCTTTCCTGGAATATGTGCATAACCGTGTGGTTGTTCGCTTTAGGATTTTGGAAAAACCAAAGGAGGATGACTTTAGTCTTGAGCTGTCAAAGCTTGACACCTATGACAATGTTGTTGAAGAAGTTGCTCAACATATTGGTTTGAATGATCCTTCTAAAATCAGACTCACATGTCATAACTGTTACTCCCAGCAACCTAAACCGCAGTCTATAAAGTACAGAGGAATAGAACATTTGTCGGACATGCTAATTCACTATAATCAGGCTTCCGATATTCTATACTATGAAGTATTGGATATCCCTTTGCCAGAATTGCAATGCCTAAAAACTCTTAAAATTGCTTTCCATCATGCTACCAAGGATGAAGTGGTGATTCATACTATTAGATTACCGAAGCATTGTATAGTGTCAGATGTAATTAATGATCTTAAATCAAAGGTAGATTTATCACATCCAGATGCAGAACTTAGATTGCTTGAAGTTTTCTATCACAAGATCTATAAGATTTTCCATATCAACGAAAGGATTGAGAATATTAATGATCAATATTGGACTCTTCGAGCAGAGGAGATTCCGGAGGAAGAGAAAAACCTTGGCCCTCATCATCGGTTGATCCATGTCTATCATTTCTTGAAAGACACTAATCAAAATCAGCAAGTTCAGAACTTTGGACATCCTTTTTTCTTAGTGATCCATGAGGGTGAGACATTAGCTGAAGTCAAATTGCGAATACAGAGCAAGTTGCAAGTTCCAGACGAGGAGTTTTCAAAGTGGAGATTTGCATTTTTGTCATTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTGTTTCCACTCGGTTTCAGAGAAGGGATATATATGGTGCGTGGGAGCAGTACCTCGGACTGGAACACACTGACAATAGTCCTAAAAGATCGAATGCAGCCAATCAGAATCGTCACCCATACGAGAAGCCATTAGTGAGGCTTCCAGAGGATGGGGAAATGTCTAATGCTTCTGCAGTGGCTAACATGTAA 3396 0.3955 MTLMTPPPLDQQQPQEQPLEQPQEQDEMQVPYGPQPMEAAESTSQVAAPTMDDTPSAKFTWTIDNFSELPKRVFSDVFCVGGFNWRVLIFSKGNSVDHLSMYVDVADAANLPYGWSKYAQFSLTVVNQIHSKFSIRKESHHQFNARACDWGFANFMPLDHLYDPARGYLVNDTCVVEADIAVRKDMDWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYQMPTTENDSPSRSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINEDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYHAEHHGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLDRDNGKYLSPEADRSIRNLYSLHSVLVHSSGVNGGHYYAYIRPTLSDQWFKFDDERVTKEDAKRALEEQYGGEEELPHTNPGFNNSSFKFTKYSNAYMLVYVRESDKDKIICNVDEKNIAEHLRMRLRREQEEKDLKRKEKAEAHLYTIIKVARDEDLREQIGNDIFFDLVDHDRVQSFRIQKQMPFVIFKEEVAKEFGIPIQCQRFWLWAKRQNNTYRPNRALTPQEEAQSVGLLREVSNKANNAELKLFLELEMGKDLQPIPPPEKSKENLLLFFKLYEPSNERLRYVGRLFVMFSGKPVDILVKLNEMAGYAPDEEIDMFEEIKFEPNVMCERVDKKSTFRESQLEDGDIICFQKSHKTESEELYRYPDVPSFLEYVHNRVVVRFRILEKPKEDDFSLELSKLDTYDNVVEEVAQHIGLNDPSKIRLTCHNCYSQQPKPQSIKYRGIEHLSDMLIHYNQASDILYYEVLDIPLPELQCLKTLKIAFHHATKDEVVIHTIRLPKHCIVSDVINDLKSKVDLSHPDAELRLLEVFYHKIYKIFHINERIENINDQYWTLRAEEIPEEEKNLGPHHRLIHVYHFLKDTNQNQQVQNFGHPFFLVIHEGETLAEVKLRIQSKLQVPDEEFSKWRFAFLSFGRPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHTDNSPKRSNAANQNRHPYEKPLVRLPEDGEMSNASAVANM 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00499 1131 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 48 526 - -
Phco6g00499 1131 Pfam Ubiquitin carboxyl-terminal hydrolase 199 520 IPR001394 GO:0004843|GO:0016579
Phco6g00499 1131 FunFam Ubiquitin carboxyl-terminal hydrolase 13 684 801 - -
Phco6g00499 1131 Gene3D Cysteine proteinases 196 524 - -
Phco6g00499 1131 FunFam Ubiquitin carboxyl-terminal hydrolase 13 54 195 - -
Phco6g00499 1131 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 624 876 IPR024729 -
Phco6g00499 1131 MobiDBLite consensus disorder prediction 1092 1106 - -
Phco6g00499 1131 FunFam Ubiquitin carboxyl-terminal hydrolase 13 802 899 - -
Phco6g00499 1131 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 200 215 IPR018200 GO:0004843|GO:0006511
Phco6g00499 1131 MobiDBLite consensus disorder prediction 1091 1131 - -
Phco6g00499 1131 SUPERFAMILY TRAF domain-like 53 185 - -
Phco6g00499 1131 MobiDBLite consensus disorder prediction 1 24 - -
Phco6g00499 1131 Pfam MATH domain 63 181 IPR002083 GO:0005515
Phco6g00499 1131 Coils Coil 539 559 - -
Phco6g00499 1131 CDD MATH 58 180 IPR002083 GO:0005515
Phco6g00499 1131 ProSiteProfiles MATH/TRAF domain profile. 56 180 IPR002083 GO:0005515
Phco6g00499 1131 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 199 523 IPR028889 -
Phco6g00499 1131 Pfam Ubiquitin-specific protease C-terminal 886 1096 IPR029346 -
Phco6g00499 1131 Gene3D - 684 801 - -
Phco6g00499 1131 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 195 IPR008974 GO:0005515
Phco6g00499 1131 MobiDBLite consensus disorder prediction 1 51 - -
Phco6g00499 1131 FunFam Ubiquitin carboxyl-terminal hydrolase 13 196 524 - -
Phco6g00499 1131 SUPERFAMILY Cysteine proteinases 194 547 IPR038765 -
Phco6g00499 1131 Gene3D - 802 899 - -
Phco6g00499 1131 CDD peptidase_C19C 197 525 - -
Phco6g00499 1131 SMART math_3 58 161 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00499 Phco-Chr6 4788100 4819832 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02294 2 53515996 53519800 Phco6g00499 6 4788100 4819832 ECH
Phco6g00167 6 1630499 1632280 Phco6g00499 6 4788100 4819832 ECH
Phco6g00499 6 4788100 4819832 Phco6g00499 6 4788100 4819832 ECH
Phco2g02294 2 53515996 53519800 Phco6g00499 6 4788100 4819832 PCT