Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02294 ATGTTTAAAAAACAACTTAATCAATTTGATCATGGATTAAAAAAACAAGACAAGATGATGTCGCTAGCCACTAGAATGGAAAAACAGAAGGGAACAAGTGTTGATTTTGAGACATTCACGTGGAAGATTGAAAACTTCTCAAAACAGAACAGGAAGAAACTACAATCCAAGGCCTTCCGAATTCAAGGTTATAAATGGCGTATTCGTTTGTATCCATTAATGAAAAATGTTGATCATTTCTCGTTATATTTGATGGTTGCGGATTCTTTACCACCGTACGGATGGAGCAGAGATGCATATTTTACGTTGTCTCTGCTTAATCAATTGGATGGCGATAAGTCAGTTGTAAAGGAGACTCGGCAGAAGTTCAATGGTGGATATCGTAGCTGGGGCTCATTTTTCGTGAACCTAAGTGTCTTCCATGACTCAAAGCAAGGATATCTTGTGAATGACACATGCATCATTGAAGCTCATCTCTGTGTCTCGGATCTTTGTACTGTTGAAGCTAACAATTTGAACACAGTCACTCCAATTAACTACGCTTGGTTGGGTGATCAAGCAAGAAGAAATTCAGAATCCAGACAGAAGGAAGATGATAAAGAAACAGAAACAGAAACATCAGATGAGAGTGAGACACTTAGTTCGAGCACCTGTGGGTCTAGTCAAACAGAAGGGGAAGTTCTAAGTTCAGATTTGACACTAAAAGACCTTCTAGATTTGGGGAGTTTAGGGAAAGAAGAAGCAGCTTTTGTTCCACTGTTGGAAGAGGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGATGAAAAGTTCTAGATGGTTCAAACTATGGGCATTCACATCATTAGGTCAAGTTCTACACTTACTCAAGACAAGTAAAGCGAAGGATATGAATGAAGATGCATGCAATCGCCTTCATGGTTTATGGGAGGAACTTGTTAAACATTCTGGATTTCAGTTGTCTTGGTTGGAGCCTTATGTTGAATCTGCATTGGGTATGAAAGCTCATTTGGAAAAAACTGAAGAGGTGAACAAACTGAAAGACAGTGTGGTTGCTTTGGAGATCAAAATGAAGAAGCTGAAGGGAGAATTGGCAGCTGCAGAAGCTGAGTTTGAGGTAACAAGGAGGGCCTTGGTTGAGGCCAAAAAAGGTTTCATTGAGTTGGATTTTAATGCTGTATTAGGTTATGCTATGTTTTAG 1203 0.3965 MFKKQLNQFDHGLKKQDKMMSLATRMEKQKGTSVDFETFTWKIENFSKQNRKKLQSKAFRIQGYKWRIRLYPLMKNVDHFSLYLMVADSLPPYGWSRDAYFTLSLLNQLDGDKSVVKETRQKFNGGYRSWGSFFVNLSVFHDSKQGYLVNDTCIIEAHLCVSDLCTVEANNLNTVTPINYAWLGDQARRNSESRQKEDDKETETETSDESETLSSSTCGSSQTEGEVLSSDLTLKDLLDLGSLGKEEAAFVPLLEEACIWHPSLIRSQMKSSRWFKLWAFTSLGQVLHLLKTSKAKDMNEDACNRLHGLWEELVKHSGFQLSWLEPYVESALGMKAHLEKTEEVNKLKDSVVALEIKMKKLKGELAAAEAEFEVTRRALVEAKKGFIELDFNAVLGYAMF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02294 400 SMART math_3 38 140 IPR002083 GO:0005515
Phco2g02294 400 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 36 373 - -
Phco2g02294 400 MobiDBLite consensus disorder prediction 209 227 - -
Phco2g02294 400 MobiDBLite consensus disorder prediction 189 227 - -
Phco2g02294 400 ProSiteProfiles MATH/TRAF domain profile. 36 159 IPR002083 GO:0005515
Phco2g02294 400 Coils Coil 344 378 - -
Phco2g02294 400 SUPERFAMILY TRAF domain-like 38 162 - -
Phco2g02294 400 Pfam MATH domain 43 159 IPR002083 GO:0005515
Phco2g02294 400 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 176 IPR008974 GO:0005515
Phco2g02294 400 CDD MATH 38 159 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02294 Phco-Chr2 53515996 53519800 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02294 2 53515996 53519800 Phco6g00499 6 4788100 4819832 ECH
Phco2g02294 2 53515996 53519800 Phco2g02294 2 53515996 53519800 ECH
Phco2g02294 2 53515996 53519800 Phco3g00893 3 7522975 7534480 ECH
Phco2g02294 2 53515996 53519800 Phco6g00499 6 4788100 4819832 PCT
Phco6g00168 6 1641413 1642845 Phco2g02294 2 53515996 53519800 PCT