Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01741 ATGGAGATTCAACAAGCGCTGAAGCTCACTATCCACAAGAAATGGCCGTCATCACCCAAGAAAACACCAAAAGATTCAGAACCAATTACCACAACCGCAACTTCAAAGCTGAAATGGAAGAAAATCTTCTTTCACACCAAACCCAAACCCAAAATCCAAACCCCCCCAGAAGAGTTCCTCTGCCCCGTTTCCCGTTCCCTCATGTCCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAGCGCTCCTCCGTCGAAGCCTGTAAAAATCTTAACTTTGCACCCCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAATCTCGCCCTTAAATCCGCCATACTCAAGTGGTGCCACACCACCCACACCCCCCCTCCTCTCCCCCACAACAACCTCGTACAGCAAACCTCAATCTCCCCAGACACCCCCAACACGAACCTCGTACAAACCTCGATCTCCCCGGACATCGTTCCCACAGAAGATAAACTCTCCGACAGAGATCCGATCCTGGATTCCCTGGACGAAAAACCACCCTCGAGCAACCTCCGCCGCCACGCGGAAACCGATGTGCCCATAAGACCAACACATCTGTACACGAGCTCCGAGGAATCCATAGCCACAACCTCAGCTTCGACGCCGCCGTTTCAGCTCGCCACGCGCCCCAGTTGCTGCTACTACTCTTCCCCTTCCTCGTCAGAAATTGAACCCGCCGCAACCCCAGAAGAAGAAGAAATCATGGAGAAGCTCAAAAGCCCAACACAGAACATAATCGAGGAAGCGCTTCTCTCTCTGAGAAAACTCACCCGAATGAGAGAAGAAACCCGGGTCCAACTCTGCACCCCGCGGATACTCTCTGCGTTACGTTCGCTCGTTATGTCAAAACATGTGAACGTTCAGGTGAACGCTTTGGCTTCAGTGGTGAACCTTTCTCTGGAGAAGAGTAACAAGGTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAGGTTCTGAAATTTGGATCCCCTGAGGCGCAGGAACACTGTGCGGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGTGTTTTGGGTGGTTTGGGTCCGTTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGACATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTAAGTATGGTTAAGTTGGGTCATATGACGGGTCGGGTTTTGTTGATTTTGGGGAACTTGGGTTCCGGGTCGGACGGACGGGCCGCGATGTTGGATGCTGGTGTTGTGGAGTATTTGGTTGGGTTACTGAGTGGACCCGACTCGGCTACCGGGTCGGTTCGGGAGAGCTGTGTGGCGGTGATGTATGCGTTGAGTCACGGCGGCTTGAGGTTTAAGGCGGTTGCGAAGGCGGCGGGGCTGGTGGAGGTGTTGCAAAAGGTGGAGAAAGTGGGGAGTGAGAGGGCTAGGCATAAGGTAAGGAAGATTTTGGAGATGATGAGGGCCAAAGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGTTGCTTGACTCAGGGCTGGGTTGCCGGACTTGGGGCCGACTCGGTGGCGGGTTGGACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1689 0.5429 MEIQQALKLTIHKKWPSSPKKTPKDSEPITTTATSKLKWKKIFFHTKPKPKIQTPPEEFLCPVSRSLMSDPVIVSSGHSFERSSVEACKNLNFAPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLVQQTSISPDTPNTNLVQTSISPDIVPTEDKLSDRDPILDSLDEKPPSSNLRRHAETDVPIRPTHLYTSSEESIATTSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEIMEKLKSPTQNIIEEALLSLRKLTRMREETRVQLCTPRILSALRSLVMSKHVNVQVNALASVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSPEAQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKLGHMTGRVLLILGNLGSGSDGRAAMLDAGVVEYLVGLLSGPDSATGSVRESCVAVMYALSHGGLRFKAVAKAAGLVEVLQKVEKVGSERARHKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTWGRLGGGLDESSANSAEF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01741 562 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Phco5g01741 562 MobiDBLite consensus disorder prediction 161 189 - -
Phco5g01741 562 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Phco5g01741 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 137 IPR013083 -
Phco5g01741 562 MobiDBLite consensus disorder prediction 12 32 - -
Phco5g01741 562 Pfam U-box domain 56 124 IPR003613 GO:0004842|GO:0016567
Phco5g01741 562 PANTHER U BOX DOMAIN-CONTAINING 47 521 - -
Phco5g01741 562 SMART arm_5 316 356 IPR000225 GO:0005515
Phco5g01741 562 SMART arm_5 357 397 IPR000225 GO:0005515
Phco5g01741 562 SMART arm_5 275 315 IPR000225 GO:0005515
Phco5g01741 562 SMART arm_5 437 480 IPR000225 GO:0005515
Phco5g01741 562 SUPERFAMILY RING/U-box 52 124 - -
Phco5g01741 562 FunFam RING-type E3 ubiquitin transferase 244 520 - -
Phco5g01741 562 Pfam Armadillo/beta-catenin-like repeat 319 355 IPR000225 GO:0005515
Phco5g01741 562 SUPERFAMILY ARM repeat 249 518 IPR016024 -
Phco5g01741 562 Gene3D - 247 425 IPR011989 -
Phco5g01741 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 369 IPR000225 GO:0005515
Phco5g01741 562 Gene3D - 426 531 IPR011989 -
Phco5g01741 562 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01741 Phco-Chr5 53529946 53531634 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01741 5 53529946 53531634 Phco7g02172 7 38513188 38514789 ECH
Phco5g01741 5 53529946 53531634 Phco5g01741 5 53529946 53531634 ECH
Phco5g01741 5 53529946 53531634 Phco3g02777 3 54147508 54152572 PCT