Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02172 ATGGGTGGCAATGGGAAGCACAGATGGAAAATCTCTTTCCACCGTTCCTCTTCCCAATCCTCAAAGATGGACCCTAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCCGGCTCCTTAATGTCCGACCCGGTTGTCGTCGCTTCGGGCCAAACCTTCGAACGCCTCGCCGTGCAAGTCTGCAAGGACCTCAACTTCTCCCCCAAGCAAGAAGACGGCACCCGGCCCGATTTCTCAACAGTAATCCCTAACTTAGCCCTCAAAACCACAATCCTCAACTGGTGCGACAAATTCCACACCCAACACCCGCGGCCACCCGATTTCGCCTCCCTCCAGCGCCACGTCACACAAGCAATGGCCGTTTCAGGGGAACAAAACCAACAGGAAGAGCAAGAACAACGAATTAGGGTTTCGGAAAAGGTGCTTCTCGACGCGGTCGCGGATAACCCCCCCGTCATTTTCTCCCACGCCGCCACTGAGTTAGGCCCCCGTGCCAACCACTTCAACTCGGGATCCTCCGAGGAATCGGTTATCATTCCGCACAGTCCGGGAACGCCGTTACCGTTTACCATTCGTCCAACCTGCTTCTCCTCATCCTCCTCCTCGTGCGAGATCGAAATTGAAAACCCTAGCGCGCCGGTTACCGAGGAAGAGGAAGGAATATTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGCAAGAAGAGGGCGTAATCGCGCTGAGGAAGATGACGAGGAGCAAAGAGGAGTCTAGGTCCTTGCTCTGCACGCCTCGGGTTCTGCTGGCGCTGCGCGGTTTAATCGCTTCGCGGTACGGCGTTGTTCAAGTAAACGCGGTGGCGTCGCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATCGTGAGGTCAGGGTTTGTTCCGTTTCTAATCGATGTTTTGAAGGGGGGTTTGGATGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCCTTGGATGATGATAATAAAATGGCCATTGGCGTTCTCGGCGCGTTGCAACCGCTGATGCACGCGCTGCGTGCTGAGTCCGAGAGGACTCGTCACGACTCGGCGCTCGCGTTGTATCATCTGAGCCTTGTTCAGAGTAACCGGGTGAAGCTGGTGAAACTCGGGGCGGTTCCGACGCTTCTTTCCATGGTGGTGGCGGGTAATTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCGGTGTGCACGGAGGGGCGCACGACAATGCTGGACGCGAACGCGGTGGAGTGTCTTGTGGGGCTATTGAGAGCGAACGAGTTGGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCACTGTTCGCACTGAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGACGCGAGAGTCGTGGAGGTTTTGAAGGAGGTGGAACAAACAGGAACGGAGAGGGCCAGGGAGAAGGCCAGGAAGGTATTGCACATGTTGAGAACTGTGGGCGATGGAGATGACGATGAAGGTGACGACTTTTACGACTCGGCCGGGTTGACGCGGAATCGTTACCGACTTGGTGCTGCCAGGAACCACAACATCGCCAACACGACCACGTTTTAG 1602 0.5612 MGGNGKHRWKISFHRSSSQSSKMDPKLPPKEFTCPISGSLMSDPVVVASGQTFERLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALKTTILNWCDKFHTQHPRPPDFASLQRHVTQAMAVSGEQNQQEEQEQRIRVSEKVLLDAVADNPPVIFSHAATELGPRANHFNSGSSEESVIIPHSPGTPLPFTIRPTCFSSSSSSCEIEIENPSAPVTEEEEGILKKLKSSEVFEQEEGVIALRKMTRSKEESRSLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRAESERTRHDSALALYHLSLVQSNRVKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTTMLDANAVECLVGLLRANELDSEATRENCVAALFALSHRSLRFKGLAKDARVVEVLKEVEQTGTERAREKARKVLHMLRTVGDGDDDEGDDFYDSAGLTRNRYRLGAARNHNIANTTTF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02172 533 Pfam Armadillo/beta-catenin-like repeat 329 368 IPR000225 GO:0005515
Phco7g02172 533 SUPERFAMILY RING/U-box 14 104 - -
Phco7g02172 533 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Phco7g02172 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 101 IPR013083 -
Phco7g02172 533 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Phco7g02172 533 Gene3D - 213 501 IPR011989 -
Phco7g02172 533 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Phco7g02172 533 FunFam RING-type E3 ubiquitin transferase 9 102 - -
Phco7g02172 533 SUPERFAMILY ARM repeat 221 492 IPR016024 -
Phco7g02172 533 Pfam U-box domain 29 96 IPR003613 GO:0004842|GO:0016567
Phco7g02172 533 MobiDBLite consensus disorder prediction 1 28 - -
Phco7g02172 533 PANTHER U BOX DOMAIN-CONTAINING 21 492 - -
Phco7g02172 533 SMART arm_5 288 328 IPR000225 GO:0005515
Phco7g02172 533 SMART arm_5 329 369 IPR000225 GO:0005515
Phco7g02172 533 SMART arm_5 409 452 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02172 Phco-Chr7 38513188 38514789 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01741 5 53529946 53531634 Phco7g02172 7 38513188 38514789 ECH
Phco7g02172 7 38513188 38514789 Phco7g02172 7 38513188 38514789 ECH