Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03252 ATGTCAAGTCACGGTGGTTCTTCTCGAAGGGGCAGTTCGTTGTTGAACAGCCCCTCGCCGAACAAGAAGAAAGCCACTGAGTATTCGCCGCTTGACCTTACTACTCGTAAAGCGTTCCCGTCATCGCGCACCGTGGGAGAGCGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAAACAACAACCATCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTACTACTAACTGATTCTAATGCATTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAACAAGAGTTATTGCTCGTGAGGTTAATCTCGAAGAAACAACCGCTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCTGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAGGTTCAGACATTTACCTGTGGTGGAGAACGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCGCGTATGGAAAGGGCAGCAGAGAAAGGAAAGGCTATTGCGGCTGCTGTTGAAGGTATCGAAAAACACTGGGGAACACCTACGTCTGGCACCAACTCGACGTTCTTTGAGACACTTCGCGAGCACATATTTAAGCCATCTTTGTCTACAATCATTCCTGAGAATTCAAAGGTTGTTACAGTTTCACCAAGAGACTCAGTTTTGGCGACAACAAAGAAGATGCTTGAACTTCGTGTAAGTTCCGCAGTTGTGACGGTTGATGACAAACCTTGTGGTATCCTTACTTCAAATGACATCTTGATGCGGGTGATAGCGCAAAGTCTTTCTCCAGCGTTTACTCTTGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGCAATAATTGATACACCAATAGTCGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCCGTTGTTGATAGAGATGGTACTGTTGTTGCTACTGTTGATGTAATTCATATAACTCACGCGGCTGTGGCGACAGCTAGTCAGGTCGGAAATAATGCTAGTTTTAATAATGAAGCAGCTAACTCCATGATACAAAAATTTTGGGATTCGGCCATGTCCTTAGTTCCAAATGGGGAGGATGACGATAACCAGAGCGAAACTTCCTTGAAAATGATTTCTGAGGGAGGAGAAACAGGGAGATCCCTTTCTTATCTCGGGTCAAGCATGCCGAACGCATTTTCCTTCAAAGTACAAGACAGGAAGGGTAGATTGCATAGATTCACATGCGATACTCGGTGCTTGGCAGAGGTAATAACTTGCATTCTTCATAGAGTCGGTGATGAAATTGACCCCACGAACCTGCCTCACATTTTGTACGAAGATGAAGAAAATGATAAAGTTGTACTGGCTTCGGACAGTGATCTTGCCGCAGCTGTAGACCACGCCAAGGCGGCTGGTTTGAAGGGATTGAGATTGCATTTAGACTACTCAGGAACACAGGGTTATGGAAATGATTCAAGTTCAGTAAGTTGGAAATATGGTAATTCAGAATCATGGACAACAGCATACAGCACCATTGCTGCTGGAGCTACAATTGTTGCTGCCTTGGGCCTATTGGCGTTTGTGAGGCGAAGTCAATAA 1632 0.4491 MSSHGGSSRRGSSLLNSPSPNKKKATEYSPLDLTTRKAFPSSRTVGERTVKSLRLSKALTVPETTTIYEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETTASKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTPTSGTNSTFFETLREHIFKPSLSTIIPENSKVVTVSPRDSVLATTKKMLELRVSSAVVTVDDKPCGILTSNDILMRVIAQSLSPAFTLVEKVMTPNPECAIIDTPIVDALHTMHDGKFLHLPVVDRDGTVVATVDVIHITHAAVATASQVGNNASFNNEAANSMIQKFWDSAMSLVPNGEDDDNQSETSLKMISEGGETGRSLSYLGSSMPNAFSFKVQDRKGRLHRFTCDTRCLAEVITCILHRVGDEIDPTNLPHILYEDEENDKVVLASDSDLAAAVDHAKAAGLKGLRLHLDYSGTQGYGNDSSSVSWKYGNSESWTTAYSTIAAGATIVAALGLLAFVRRSQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03252 543 ProSiteProfiles CBS domain profile. 54 113 IPR000644 -
Phco4g03252 543 ProSiteProfiles PB1 domain profile. 407 494 IPR000270 GO:0005515
Phco4g03252 543 SMART PB1_new 409 494 IPR000270 GO:0005515
Phco4g03252 543 ProSiteProfiles CBS domain profile. 221 280 IPR000644 -
Phco4g03252 543 SUPERFAMILY CAD & PB1 domains 402 498 - -
Phco4g03252 543 ProSiteProfiles CBS domain profile. 289 346 IPR000644 -
Phco4g03252 543 SMART cbs_1 227 274 IPR000644 -
Phco4g03252 543 SMART cbs_1 123 167 IPR000644 -
Phco4g03252 543 SMART cbs_1 292 340 IPR000644 -
Phco4g03252 543 SMART cbs_1 57 105 IPR000644 -
Phco4g03252 543 Pfam CBS domain 56 102 IPR000644 -
Phco4g03252 543 Pfam CBS domain 285 336 IPR000644 -
Phco4g03252 543 Pfam CBS domain 225 271 IPR000644 -
Phco4g03252 543 Pfam CBS domain 117 160 IPR000644 -
Phco4g03252 543 SUPERFAMILY CBS-domain pair 47 163 IPR046342 -
Phco4g03252 543 Gene3D - 217 356 IPR046342 -
Phco4g03252 543 Gene3D - 36 185 IPR046342 -
Phco4g03252 543 MobiDBLite consensus disorder prediction 1 24 - -
Phco4g03252 543 MobiDBLite consensus disorder prediction 1 31 - -
Phco4g03252 543 CDD CBS_pair_MUG70_2 225 341 - -
Phco4g03252 543 Pfam PB1 domain 410 492 IPR000270 GO:0005515
Phco4g03252 543 ProSiteProfiles CBS domain profile. 120 178 IPR000644 -
Phco4g03252 543 SUPERFAMILY CBS-domain pair 226 338 IPR046342 -
Phco4g03252 543 CDD CBS_pair_MUG70_1 55 171 - -
Phco4g03252 543 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 40 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03252 Phco-Chr4 53168820 53174931 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03252 4 53168820 53174931 Phco4g03252 4 53168820 53174931 ECH
Phco4g03252 4 53168820 53174931 Phco7g01737 7 17554971 17560071 PCT
Phco7g01954 7 32732006 32736851 Phco4g03252 4 53168820 53174931 PCT