Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00862 ATGGGGGACATAGTCAAGCAAATATTGGCCAAACCCATCCAGCTGGCGGACCAAGTCACCAAAGCCGCCGACGAGGCCACTTCCTTCAAACAGGAATGCGGCGAGCTCAAGTCCAAGACGGAGAAGCTGGCGGCGCTGCTGCGTCAGGCGGCGCGTTCCAGTTCCGAACTCTACGAGCGTCCCACGCGCCGCATCATCCAGGAGACGGAACAGGTCCTCGAGAAGGCTCTGGCCCTGGTACTCAAGTGTCGCGGCAACGCTCTCATGAAGCGCGTGTTCACCCTCAACCCGAGCTCCTCCTTCCGCAAGGTCTCCTCTCACCTTGAAAACTCCATTGGCGACATCTCCTGGCTCCTCCGGGTCTCGGCCGGCGAAGCCGGCGGCGAGTACCTCGGCGGGCTCCCTCCTATAGCCGCGAACGAGCCGATCCTCTGCCTCATCTGGGAGCAGATCGCCGTCCTCCACACGGGGTCCCCGGAGGAGCGGTCGGATGCGGCGGCGTCGCTGGTCTCCTTGGCGAGCGGCAGCCAGCGGTACGGGAAGCTGATAATCGAGGAGGGCGGAGTGGGACCCCTGCTGAAGCTTCTGAAGGAAGGGAAAAGCGAAGGGCAAGAGAATGCGGCACGTGCCGTGGGTCTGCTTGGGCGTGACCCTGAGAGCGTGGAGCACATGATCCACGTGGGGGCGTGCTCGGTGCTGGCGAAGATCCTGAAAGAAGGTCCTATGAAAGTGCAAGGTGTGGTGGCATGGGCGGTGTCGGAACTCGCTGCGAATTACCCCAAGTCGCAGGACCTTTTCGCTCAGCACAAGATCGTAACCTTGCTCGTTGGCCACCTCGCTTTTGAAACCGTTGAGGAACACAGTAAGTACGCTATTGTCAGCAAGAAACCTACTTCCATCCACGCCGTCCTCGTCGCCACTACCAACTCCACCAACACTAATCTCCCAAAGGAAAATCACTACCACGACGCCGAACTTCCCACACGCATCCCGCACCCCTTCGCTGAACGACCACGAAATCTCCACAGAGTAATCACCAGCACAATCGCAATGCACGCTGCCACCAAGCAAGGAAACGAAACCAATCCGAATCAGAACAAGAGTAATGGAGTTGGTAATGATGTTAAGCTGGGAAACAACAATCAAAGTCACCAGCGAAACTATTCACATTCGGGGATTAATATGAAAGGAAGGGATCTGGAGGATCCTGGAACTAAGGTTTACATGAAGGAAATGGCAGCGAGGGCTCTCTGGCAATTGGCCAAAGGTAACTCCCCAATTTGCCGTAGCATCACCGAATCACGAGCCTTGTTGTGTTTTGCTGTTCTCCTTGAGAAAGGAACAGAGGCTGTGAAGTACAATTCGGCGATGGCGGTGACGGAGATTACGGCGGTGGCAGAGAAAGATCCGGAATTGAGGAAATCGGCGTTCAAGCCGAACTCTCCCGCTTGCAAAGCCGTGGTTGATCAAGTGGTTAAGATAATGGAGAAGGCGGATTCCGATTCAATCCTTCTGATTCCGTGCATCAAGACGATTGGGAATTTGGCGAGAACATTCAAGGCCACAGAGACAAGGATGGTTGGGCCGTTGGTGAGGCTTCTGGACGAAAGGGAAGCGGAGGTGACAAGAGAGGCGTCGATTGCACTGGCGAAATTCGCTTGCACCGAGAATTACCTGCATGTGGATCACGCCAAGGCCATTATAAGCGCCGGCGGGGCTAAACACTTGATTCAGCTGGTCTATTTTGGAGAAGAGATGGTTCAGATTCCGGCGCTGCTTCTGCTCTCATACATTGCAATGCACGTCCCTGACAGCGACGAGCTTGCTCAGGCTGAAGTCCTCGGAGTCATTGAATGGGCTTCCAAGCAATCTTCCGTTGCCCATAACCAAACACTCGAGGCCCTTTTGCTCGATTCCAAGAGCAGGTTGGAGCTTTACCAGTCCAGAGGCCCCAGAGGATCCCATCAACCACATTTACATCACTAG 1986 0.5544 MGDIVKQILAKPIQLADQVTKAADEATSFKQECGELKSKTEKLAALLRQAARSSSELYERPTRRIIQETEQVLEKALALVLKCRGNALMKRVFTLNPSSSFRKVSSHLENSIGDISWLLRVSAGEAGGEYLGGLPPIAANEPILCLIWEQIAVLHTGSPEERSDAAASLVSLASGSQRYGKLIIEEGGVGPLLKLLKEGKSEGQENAARAVGLLGRDPESVEHMIHVGACSVLAKILKEGPMKVQGVVAWAVSELAANYPKSQDLFAQHKIVTLLVGHLAFETVEEHSKYAIVSKKPTSIHAVLVATTNSTNTNLPKENHYHDAELPTRIPHPFAERPRNLHRVITSTIAMHAATKQGNETNPNQNKSNGVGNDVKLGNNNQSHQRNYSHSGINMKGRDLEDPGTKVYMKEMAARALWQLAKGNSPICRSITESRALLCFAVLLEKGTEAVKYNSAMAVTEITAVAEKDPELRKSAFKPNSPACKAVVDQVVKIMEKADSDSILLIPCIKTIGNLARTFKATETRMVGPLVRLLDEREAEVTREASIALAKFACTENYLHVDHAKAIISAGGAKHLIQLVYFGEEMVQIPALLLLSYIAMHVPDSDELAQAEVLGVIEWASKQSSVAHNQTLEALLLDSKSRLELYQSRGPRGSHQPHLHH 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00862 661 MobiDBLite consensus disorder prediction 356 399 - -
Phco4g00862 661 Pfam Armadillo/beta-catenin-like repeat 182 212 IPR000225 GO:0005515
Phco4g00862 661 FunFam Armadillo repeat only 4 2 121 - -
Phco4g00862 661 Gene3D - 147 304 IPR011989 -
Phco4g00862 661 SUPERFAMILY ARM repeat 152 618 IPR016024 -
Phco4g00862 661 MobiDBLite consensus disorder prediction 356 392 - -
Phco4g00862 661 Gene3D - 3 121 IPR036537 GO:0007166
Phco4g00862 661 Gene3D - 380 640 IPR011989 -
Phco4g00862 661 PANTHER ARMADILLO REPEAT ONLY 4 1 650 - -
Phco4g00862 661 SMART arm_5 217 257 IPR000225 GO:0005515
Phco4g00862 661 SMART arm_5 424 464 IPR000225 GO:0005515
Phco4g00862 661 SMART arm_5 560 600 IPR000225 GO:0005515
Phco4g00862 661 SMART arm_5 176 216 IPR000225 GO:0005515
Phco4g00862 661 SMART arm_5 480 517 IPR000225 GO:0005515
Phco4g00862 661 FunFam Armadillo repeat only 2 149 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00862 Phco-Chr4 6701423 6703408 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00862 4 6701423 6703408 Phco4g00862 4 6701423 6703408 ECH
Phco4g00862 4 6701423 6703408 Phco8g00397 8 3609159 3612541 PCT
Phco8g00398 8 3617111 3619114 Phco4g00862 4 6701423 6703408 PCT