Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02517 ATGACAGAGCCAAAACCAAGGTATGCTGTTGTTACTGGGGCAAACAAAGGGATAGGATTGGAGACTGTTAACCAGTTGGCCTCAAATGGAGTCAAGGTGGTGCTCGCTGCCAGAGATGAGAAAAGAGGCCATGAAGCCATTGAGACATTGAAAGAATGTGGTCTCTCTGAGTTGGTGGTTTTTCACCAGCTTGATGTGACTCACTCTGCTAGTATTCATTCACTAGTAGAGTTTGTCAACACACAGTTTGGGAGACTGGATATCTTGGTGAACAATGCAGGAATCAGTGGTGTCAACCCATATGAAATGGAAGGATCAATAATTAACTGGAGGGAACTTACTCAAACTTATGAAATGGCAGAAAAGTGCCTAAGAACAAACTACTATGGTGCAAAGGAAACGACTGAGGCATTTCTTCCCCTTTTGAAATTATCCAACTCACCTAGGATTGTTAATGTTTCCTCCCAAGCAGGGTTGTTAAAGGGGATAGCAAACAAATTGGCTAAAGGGGTGTTTGATGATGCTGAAAATCTTACAGAAGATAGAATAGATGAGGTGCTGAAAGAGTTTATGAAAGACTTTAAAGAAGGTTCATTCGGAAACAAAGGTTGGCCAACCTTCTTGTCTGCCTATATGGTCTCAAAAGCAGCCATGAATTCATACACAAGGATTGTGGCCAAGAAGTATCCAAACTTTTGCATCAATTGTGTGTGTCCTGGTTTTGTGAAAACAGACATAAACAGAAACACTGGCTTCTTATCCGTTGAGCAAGGTGCTGCTAGTGTTGTGAGATTAGCACTGCTTCCCAATGGTTCCCCTTCTGGCCTCTTCTATAGCAGGCAAGAAAAGTCAAACTTTTGA 861 0.4204 MTEPKPRYAVVTGANKGIGLETVNQLASNGVKVVLAARDEKRGHEAIETLKECGLSELVVFHQLDVTHSASIHSLVEFVNTQFGRLDILVNNAGISGVNPYEMEGSIINWRELTQTYEMAEKCLRTNYYGAKETTEAFLPLLKLSNSPRIVNVSSQAGLLKGIANKLAKGVFDDAENLTEDRIDEVLKEFMKDFKEGSFGNKGWPTFLSAYMVSKAAMNSYTRIVAKKYPNFCINCVCPGFVKTDINRNTGFLSVEQGAASVVRLALLPNGSPSGLFYSRQEKSNF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02517 286 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 284 - -
Phco3g02517 286 Gene3D - 2 286 - -
Phco3g02517 286 Pfam short chain dehydrogenase 8 162 IPR002347 -
Phco3g02517 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Phco3g02517 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Phco3g02517 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Phco3g02517 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 272 IPR036291 -
Phco3g02517 286 CDD carb_red_PTCR-like_SDR_c 7 286 IPR045313 GO:0016616
Phco3g02517 286 FunFam (+)-neomenthol dehydrogenase 2 286 - -
Phco3g02517 286 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Phco3g02517 286 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Phco3g02517 286 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Phco3g02517 286 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Phco3g02517 286 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02517 Phco-Chr3 51905516 51907478 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02517 3 51905516 51907478 Phco3g02517 3 51905516 51907478 ECH
Phco3g02517 3 51905516 51907478 Phco1g00819 1 7599522 7601300 PCT
Phco1g00820 1 7612314 7614835 Phco3g02517 3 51905516 51907478 PCT