Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00819 ATGGTTGTGGCAGATGCAAAAGAAAGATATGCTGTTGTGACAGGTGCAAACAAAGGGATAGGATTAGAGACTGTGAAAGGGCTTGCCTCAAATGGAATCAAGGTGGTGCTCACAGCCAGGGATGTGAAGAGGGGTTATCAAGCAGTTGAGGAATTAAAAAAAGAATTTGGCTTTTCTGGCCTTGTGGTGTTTCACCAGCTTGATGTCACTGATCCTACAAGTATTGCATCTTTGGTTGAGTTTGTGAAGACCCAGTTTGGAAGACTTGATATATTGGTGAACAATGCAGGAATCAATGGGTTCAATACAGATGGCATGGTGCCATCAAAAATTAACTGGAAGGAGCTACCTCAAACTTGTGAGATGGCTAAAAATTGCCTAAGAACAAACTACTATGGTGCTAAGGAAACAACTGAGGCATTTCTTCCCCTTCTTCAGTTATCCAATTTACCAATGATTGTTAATGTTTCCTCTGAAGCAGGACTTTTAAAGTACATATCAAATGGATGGGCTAGGAGGGTGCTTGATGACACAGAAAATCTCAGTGAAGAGCTTATAGATGAGGTGCTGAAGGAGTACATGAAAGACTTAAAAGAAGGTTCACTAGAAAACAAAGGGTGGCCAACCTACCTTTCTGCATATATGGTCTCAAAAGCAGCCATGAATTCATACACAAGGCTTCTGGCCTATAGACACCCAAAATTGTGCATCAATTGTGTTTGTCCTGGTTTTGTTAAAACAGACATCAACAAAAACACAGGCATCTTATCTGTTGAAAATGGTGCTGCTAGTGTTGTGAGATTAGCACTCTTGCCAAATGGTTCCCCTTCTGGCCACTTCTTTACTCGACAAGAAGTGTCAAGCTTTTGA 870 0.4115 MVVADAKERYAVVTGANKGIGLETVKGLASNGIKVVLTARDVKRGYQAVEELKKEFGFSGLVVFHQLDVTDPTSIASLVEFVKTQFGRLDILVNNAGINGFNTDGMVPSKINWKELPQTCEMAKNCLRTNYYGAKETTEAFLPLLQLSNLPMIVNVSSEAGLLKYISNGWARRVLDDTENLSEELIDEVLKEYMKDLKEGSLENKGWPTYLSAYMVSKAAMNSYTRLLAYRHPKLCINCVCPGFVKTDINKNTGILSVENGAASVVRLALLPNGSPSGHFFTRQEVSSF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00819 289 Pfam Enoyl-(Acyl carrier protein) reductase 204 253 - -
Phco1g00819 289 PRINTS Glucose/ribitol dehydrogenase family signature 214 233 IPR002347 -
Phco1g00819 289 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Phco1g00819 289 PRINTS Glucose/ribitol dehydrogenase family signature 87 98 IPR002347 -
Phco1g00819 289 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Phco1g00819 289 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
Phco1g00819 289 PRINTS Glucose/ribitol dehydrogenase family signature 276 289 IPR002347 -
Phco1g00819 289 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 275 IPR036291 -
Phco1g00819 289 CDD carb_red_PTCR-like_SDR_c 9 289 IPR045313 GO:0016616
Phco1g00819 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 233 IPR002347 -
Phco1g00819 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 IPR002347 -
Phco1g00819 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Phco1g00819 289 FunFam (+)-neomenthol dehydrogenase 4 289 - -
Phco1g00819 289 Gene3D - 3 289 - -
Phco1g00819 289 Pfam short chain dehydrogenase 10 166 IPR002347 -
Phco1g00819 289 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 9 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00819 Phco-Chr1 7599522 7601300 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00819 1 7599522 7601300 Phco1g00819 1 7599522 7601300 ECH
Phco3g02517 3 51905516 51907478 Phco1g00819 1 7599522 7601300 PCT
Phco1g00819 1 7599522 7601300 Phco3g02518 3 51909794 51911557 PCT