Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00820 | ATGGGAGAAGCAACAGAAAGGTATGCAGTTGTGACAGGTGCAAATAAAGGAATTGGATTAGAGATAGTGAAGCAGTTAGCCTCAGCTGGGATCAAGGTGGTGCTCACAGCAAGAAATGAGGAGAGGGGTCTGCATGCAATGGAAACAATAAAAGCCTCAGGTCTTTCTCACCTTGTAATGTTTCATCACCTGGATGTGGCTGATGCAACCACTGTAGCCTCTCTGGCTGATTTTGTCAAATCTAAATTTGGAAAACTAGATATTCTGGTTAACAATGCAGGGATTGGTGGAGCAGTAATCAAAGACACTGATATATTTCCTTCAGTTCTCCTCAACCGTGGGATTGTATCGGAAGAAGATGGAACAAAGGCAATGACTCAAACATATGAGTTAGCTGAAGAATGCTTGCAAATAAATTACTATGGAACTAAAATAACTGTAGAATCACTTCTGCCCCTCCTCCAATTATCTGATTCACCAACAATTGTGAATGTATCATCCACTATGGGGCAGTTAGAGAGTTTCCCTAAAGAATCATGGGCAAGAGGAGTGTTCAGTGATGCTGATAACCTGACAGAAGAGAAAGTGGATGAAATACTGAAGAAGTTTCTAAGAGATTTCAAGGAAGGTTCATTAGAAAGTGAAGGGTGGCCTAGGTATCCAGGTGCCTATATTGCGTCAAAAGCTGCTATGAATGGTTATACCAGAATCCTTGCTAAGAAACATCCTTCATTCTGGATCAATAGTGTTTGCCCTGGTTATGTGAAGACAGACATAACATCCAACACCGGTCTCCTCACAGTTGAAGAAGGTGCTGCTAGTCCTGTCAAGCTTGCACTGCTTCCCAATGGCTCTCCATCTGGCCTCTTCTATTACAGAACTCAGGTGGCTTCCTTTTGA | 900 | 0.4244 | MGEATERYAVVTGANKGIGLEIVKQLASAGIKVVLTARNEERGLHAMETIKASGLSHLVMFHHLDVADATTVASLADFVKSKFGKLDILVNNAGIGGAVIKDTDIFPSVLLNRGIVSEEDGTKAMTQTYELAEECLQINYYGTKITVESLLPLLQLSDSPTIVNVSSTMGQLESFPKESWARGVFSDADNLTEEKVDEILKKFLRDFKEGSLESEGWPRYPGAYIASKAAMNGYTRILAKKHPSFWINSVCPGYVKTDITSNTGLLTVEEGAASPVKLALLPNGSPSGLFYYRTQVASF | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00820 | 299 | Gene3D | - | 3 | 299 | - | - | |
| Phco1g00820 | 299 | PRINTS | Glucose/ribitol dehydrogenase family signature | 243 | 260 | IPR002347 | - | |
| Phco1g00820 | 299 | PRINTS | Glucose/ribitol dehydrogenase family signature | 84 | 95 | IPR002347 | - | |
| Phco1g00820 | 299 | PRINTS | Glucose/ribitol dehydrogenase family signature | 8 | 25 | IPR002347 | - | |
| Phco1g00820 | 299 | PRINTS | Glucose/ribitol dehydrogenase family signature | 224 | 243 | IPR002347 | - | |
| Phco1g00820 | 299 | FunFam | (+)-neomenthol dehydrogenase | 2 | 299 | - | - | |
| Phco1g00820 | 299 | PRINTS | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 160 | 168 | IPR002347 | - | |
| Phco1g00820 | 299 | PRINTS | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 224 | 243 | IPR002347 | - | |
| Phco1g00820 | 299 | PRINTS | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 84 | 95 | IPR002347 | - | |
| Phco1g00820 | 299 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 7 | 285 | IPR036291 | - | |
| Phco1g00820 | 299 | Pfam | short chain dehydrogenase | 8 | 173 | IPR002347 | - | |
| Phco1g00820 | 299 | Pfam | short chain dehydrogenase | 222 | 262 | IPR002347 | - | |
| Phco1g00820 | 299 | PANTHER | (+)-NEOMENTHOL DEHYDROGENASE | 7 | 297 | - | - | |
| Phco1g00820 | 299 | CDD | carb_red_PTCR-like_SDR_c | 7 | 296 | IPR045313 | GO:0016616 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00820 | Phco-Chr1 | 7612314 | 7614835 | Tandem |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco1g00820 | 1 | 7612314 | 7614835 | Phco1g00820 | 1 | 7612314 | 7614835 | ECH | |
| Phco1g00820 | 1 | 7612314 | 7614835 | Phco3g02517 | 3 | 51905516 | 51907478 | PCT |