Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00956 ATGTCTAGTAGAGCAACGCACTGGTGTTATGCATGCAGACAACCAATTGTGCTTGATGGGGGAGACACTCTATGTCCTTACTGTGATGGAGGATTTATAGAAGAACTTGATGAGTTGCGAGGAGCTGCACCCCAGCATACATATTCATCACAGTCGGGAGAGTTCATTCAAATGCCTGACTTTGTTGATGCCATACGCTCTTTTATGGGGCAGAGAGGTTCTGACCAGAGATTCGGGATTGTGGAGGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAATTTTGATGTTAGAGGGAGGTCAGGTTCTTTCCCAGCTCCTGAACAGAGTTGGGGTGTTTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCACCTTGGCAACAGGCAGCCCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTCACTATGAATGATCGCCGAGGCCCTCCGCCAGCCGCACGATCTTTGATCGATGCTATGCCTACTATTAGGATAACACAGGCACATGTTCGCTTAGATTCACACTGTCCAGTTTGTAAAGATAAATTTGAACTGGGCACTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTCGAGTTGCCACCTCAAGGACAGGTTAACTCCCGCAGTACAAGTTTGGGAGGAAGGAATGGCAGTTCCAGCAGCAGTGGCAGCAATGATAGTAGCTCCAGGGGCAGGGAGAACAACAGCCCTCAGAACCATGGAAGGAGAAATCCATTATCATTTTTGTGGCCATTCCGCTCCTCCTCTAGCTCAAACAATAATCATTATTCTGAGACTGGGGGAAGCAGTTCTTCAACCACTCCTGACCAGAATAATGGAACAAGTTATAGTGGTTGGCCTTTTGATCACTAA 1008 0.4603 MSSRATHWCYACRQPIVLDGGDTLCPYCDGGFIEELDELRGAAPQHTYSSQSGEFIQMPDFVDAIRSFMGQRGSDQRFGIVEAVDNFMRHRMAGRNSNFDVRGRSGSFPAPEQSWGVFSSGPYLIFHGQVPGFTLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSLIDAMPTIRITQAHVRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVNSRSTSLGGRNGSSSSSGSNDSSSRGRENNSPQNHGRRNPLSFLWPFRSSSSSNNNHYSETGGSSSSTTPDQNNGTSYSGWPFDH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00956 335 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Phco3g00956 335 SMART ring_2 200 240 IPR001841 -
Phco3g00956 335 MobiDBLite consensus disorder prediction 247 335 - -
Phco3g00956 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Phco3g00956 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 245 - -
Phco3g00956 335 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Phco3g00956 335 SUPERFAMILY RING/U-box 180 247 - -
Phco3g00956 335 MobiDBLite consensus disorder prediction 246 335 - -
Phco3g00956 335 Pfam Ring finger domain 199 241 IPR001841 -
Phco3g00956 335 CDD RING-H2_RNF126-like 200 241 - -
Phco3g00956 335 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00956 Phco-Chr3 8034565 8035572 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02677 2 56436289 56437449 Phco3g00956 3 8034565 8035572 ECH
Phco3g00956 3 8034565 8035572 Phco3g00956 3 8034565 8035572 ECH
Phco11g02284 11 21592058 21593830 Phco3g00956 3 8034565 8035572 PCT