Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02284 ATGTCAAGTGGAGCAACATACTGGTGTTACTCATGCAGGCAGCCAATCAGGATTGCCGGGAGGGCCATTTGCCCTTACTGCAATGAAGGCTTCTTGCATGAACTTAGTGACATGCGAGGAGTAGTGGAGCGAAGAGGTTCTGAATCAAGAACTGGGTTTAGATATGCTGTTGATAACTTCATGAGGCAGATAATGGGTGGAAGATACATAAATTTTGGTACTAGGATTAGGAGATCTGGTTCTACCCGACCTCCTGAACGGACCTGGAGCGTGTTTATGTTTCCTAGTCAAGATTCAAGTTCTGATCCGGAAGAATTCTCTTATCAACACATTACAAATTACCAGTTTGGTGCATCACAATCTTCAATTAATGCATTGCCAACTATTAAGATCACACGTGAGCACCTCAACTTTGATTCACTGTGTCCTGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGTCAGGAAGATGGCATGTGACCACATTTACCACTCAGACTGTATCGTTCCATGGTTAGTTCAGCATAACTCGTGTCCTCTTTGCCGTAGTAAGCTTCCTCCTGAAAGACATTCTAGTTCTCATGGTACTCAAATTTGGGGCGGATGGAATGCCAGTGATAATAATAGTGACAATACTGTCTCTAGGGGCAGGGAGAACAGACAACTGAACAATGGATGGAGAAATCTACTGTCATTTTTTACATTTTGTAGCCATTCTGTTATTCTAATTCAGATACTTAATCGTTTCTTAGATGTTTTCAACTTTGGTTCAACGGTAATTTGGAAGATCCTTTCAGGATGTGTTTGGGAGATGGCAGCTAATTCCTATTCTGTTTTATCAACATTCACATTTGTTATAGCTCTACTTGCTATTGGTGCAGCTTATTCTTCTGAATTTCAAGTTTTTGGAGAATTACCTCATCGTTTGAGAGCTTCCATCCATTATGAATAA 954 0.4067 MSSGATYWCYSCRQPIRIAGRAICPYCNEGFLHELSDMRGVVERRGSESRTGFRYAVDNFMRQIMGGRYINFGTRIRRSGSTRPPERTWSVFMFPSQDSSSDPEEFSYQHITNYQFGASQSSINALPTIKITREHLNFDSLCPVCIERFEVGSEVRKMACDHIYHSDCIVPWLVQHNSCPLCRSKLPPERHSSSHGTQIWGGWNASDNNSDNTVSRGRENRQLNNGWRNLLSFFTFCSHSVILIQILNRFLDVFNFGSTVIWKILSGCVWEMAANSYSVLSTFTFVIALLAIGAAYSSEFQVFGELPHRLRASIHYE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02284 317 FunFam E3 ubiquitin-protein ligase RING1-like 107 189 - -
Phco11g02284 317 SMART ring_2 142 182 IPR001841 -
Phco11g02284 317 Pfam Ring finger domain 142 183 IPR001841 -
Phco11g02284 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 189 IPR013083 -
Phco11g02284 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 102 187 - -
Phco11g02284 317 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Phco11g02284 317 MobiDBLite consensus disorder prediction 193 218 - -
Phco11g02284 317 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Phco11g02284 317 SUPERFAMILY RING/U-box 122 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02284 Phco-Chr11 21592058 21593830 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02284 11 21592058 21593830 Phco3g00956 3 8034565 8035572 PCT