Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02677 ATGATGTCTTCTGGGACATCCTCGTACTGGTGCTACCGGTGCAGCCGCTTCATCCGCGTTTTCCGCCAGGATGCCGTGGTCTGTCCCGACTGCGACAGCGGATTTATCGAAGAAATCGAACACCCGCCGCGTTCAGTTCACCTTGACCCTCGCCGCCGCCGCTTCCCCGCCGCCGCCATGTACATGATCGGTCAGCGCCCCGCCTCCGATAACGCTGCCCGTCCTGCTCTACGCCGCACCCGCCGCAACGGTGGTGACCGCTCCCCTTTCAACCCTGTTATCGTCCTCCGTGGCGGCGCAGCTGCCACCTCCGCTACCAGCGAGGACGAAAGTCGAGGCTTTGAACTCTTCTACGACGATGGTGCGGGTTCTGGCCTGAGACCCCTGCCTCCGAGTATGTCAGAGTTTCTTCTTGGATCTGGATTCGATAGGCTTCTGGAACAACTCTCTCAGATTGAGATCAACGGTATTGGAAGGTACGAGCATCCTCCTGCCTCAAAAGCAGCCATAGATTCGTTACCAACCATCGAAATCGATGACACTCACTTAGCCATGGAATCACACTGCGCCGTTTGCAAAGAAGCTTTTGAATTAGGTACGGCGGTGAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTCGCCCTTCACAATTCTTGTCCTGTTTGTCGGCACGAGTTACCTGCGGATTCCTCAAATGTAAATTCAAATGCGAATTCAAATCCACCACAAAACGTGGGCTTGAACGAGGAAGAGAACGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTAGGGAGATTCTCCGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTGTATACTGAGATGGATGGAGGGTTTAACAATGGAGGTGAGCCCAGGAGGATTTCATGGTCTTCTAGAGGGAACAGAGGGAGAGAGAGTGGGGGGTTGAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGTGGCGTTGGAAATAGTGGTACTAATACTACACAGCGTTCTACTTCTAGTAGAGAGTCTATGCGAGCGAGTTCTTCTCGTTCTAGTATGGATCCTTCTCCGCGGTCACGCAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1161 0.534 MMSSGTSSYWCYRCSRFIRVFRQDAVVCPDCDSGFIEEIEHPPRSVHLDPRRRRFPAAAMYMIGQRPASDNAARPALRRTRRNGGDRSPFNPVIVLRGGAAATSATSEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSSNVNSNANSNPPQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGLNRFFRNLFGCFRGGVGNSGTNTTQRSTSSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02677 386 SMART ring_2 189 229 IPR001841 -
Phco2g02677 386 MobiDBLite consensus disorder prediction 338 378 - -
Phco2g02677 386 MobiDBLite consensus disorder prediction 337 386 - -
Phco2g02677 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Phco2g02677 386 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Phco2g02677 386 SUPERFAMILY RING/U-box 169 239 - -
Phco2g02677 386 CDD RING-H2_RNF126-like 189 230 - -
Phco2g02677 386 FunFam E3 ubiquitin-protein ligase RING1-like 151 236 - -
Phco2g02677 386 MobiDBLite consensus disorder prediction 302 321 - -
Phco2g02677 386 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Phco2g02677 386 Pfam Ring finger domain 188 230 IPR001841 -
Phco2g02677 386 Pfam Protein of unknown function (DUF1117) 260 365 IPR010543 -
Phco2g02677 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02677 Phco-Chr2 56436289 56437449 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02677 2 56436289 56437449 Phco3g00956 3 8034565 8035572 ECH
Phco2g02677 2 56436289 56437449 Phco2g02677 2 56436289 56437449 ECH