Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00332 ATGGCCACCACAATCAGACACCCCTCTCATAAGTCTAAAGAGCACTTCAAAGTCTGTTTCTGTTTCAGGAGAATGTTTAGGCTCAAAGTGGCTGAGCCTCCTGATGAAATCAAGACTGTTTTTGAAAATTATTCACATAATGGAGTCATGAGCATGGATGATATGTGCAATTTCTTGGTTGAATTTCAAGGAGAAGAAGAGGAAGGTATCAGCACACGTGCTCAAACCATTTTTGACAGTCTCAAGCATCACAATATATTTCAAAGGAGAGGCTTTCATGTTGATGCCTTCTTCCGTTACCTCTTAAGTGACCTTAATGGTCCCCTTACTGAGGTGCACCATGACATGAATGCTCCTTTGGCTCATTATTTCTTGTACACAGGCCACAACTCCTATTTAACTGGAAATCAAGTTAGCAGTGCTAGCAGCACTTCTGCAATAATAAAGGCATTGAGGAAAGGAGTTAGAGTAATTGAGCTAGATTTATGGCCAAATTCCAGAGGCGACGATGTGCTAGTTCATCATGGAGGGACTCTGACTTCTTCACTGAAACTAAGAGCTTGTCTGATTGCCATTAAGGACAATGCATTTTTTGCCTCTCCATATCCTGTTGTTATAACTTTTGAAGACCATATCACTCCATCTCTTCAAGCCAAAGTGGCTAAGATGCTCATTGACATATTTGGAGAGATGTTATTTTGTCCTGAAAATCCACACCAAATGAGGGAATTCCCTTCACCAGAAGGATTGAAGAACAAAATTCTAATTTCAACTAAACCACCAGAATCTTCTGGAAATCAGGACCAAAAGACACAAGAGGAAGCACCAGAGAGGCTTGAGGAATATCATGACAGATCTAGAGTCAATTACAAGATTTTTTGTGTTGTGTTGTTGAGTCAGGATGATTCAGATGATTCAGATGATACTCCTGAATATAGGGATTTGATTTCCATTCGTGCAGGAAAACCTAAAGGTAAGTTAAAAAACTGCTTGGTTGATCATAACCAAGTGAGACGCCTAAGCTTGAGTGAGCAAGAGCTTGAAGATATTTCCAAAAATCATGGACCTGACATTGTCAGATTCACCCAGAGAAATTTGCTTAGAATATATCCAAAGGGTACTCGTTTTGATTCGTCTAATTATGATTCCATGATTGGGTGGATGCATGGAGCTCAAATGGTAGCGTTTAATATGCAGGGAGGAGGGCACTATCTTAGGTACATGGAAGGAATGTTCAGAGCCAATGGTGGCTGTGGTTACATTAAGAAACCAGACATATTGCTTAATGATAACAACATTTTTGATCCAAGAGCATTTCGGCAAGTCCAAAAAACTCTTCAGGTTTTGGTATACATGGGTGATGGGTGGCGTTCCGATTTCGGCCCAACTCACTTTGACTTTTATTCTCCTCCTGACTTCCGTGTAGAGGTTGGTATTCATGGTGTACAAGCTGATAAAGCTATGAAATACACAAGTACAGTTGAAGATGATTGGGTACCAGTGTGGAATCAGGAATTGAGTTTTAGATTAACAGTTCCTGAATTGGCTCTTCTATACATCAAAGTTGTTGAACGTGACTTTTCTGGAACACATGACTTTGGTGGACAGACATGTTTACCTGTCTCGCAACTAAGAGAAGGCATTCGTGTTGTTCGTTTGCGCAATCGTAAGGGTGAACTTTACAACTCTGTTAAGCTTCTCATCCAATTTCACTTTCATCATCACACTTTATAA 1734 0.4014 MATTIRHPSHKSKEHFKVCFCFRRMFRLKVAEPPDEIKTVFENYSHNGVMSMDDMCNFLVEFQGEEEEGISTRAQTIFDSLKHHNIFQRRGFHVDAFFRYLLSDLNGPLTEVHHDMNAPLAHYFLYTGHNSYLTGNQVSSASSTSAIIKALRKGVRVIELDLWPNSRGDDVLVHHGGTLTSSLKLRACLIAIKDNAFFASPYPVVITFEDHITPSLQAKVAKMLIDIFGEMLFCPENPHQMREFPSPEGLKNKILISTKPPESSGNQDQKTQEEAPERLEEYHDRSRVNYKIFCVVLLSQDDSDDSDDTPEYRDLISIRAGKPKGKLKNCLVDHNQVRRLSLSEQELEDISKNHGPDIVRFTQRNLLRIYPKGTRFDSSNYDSMIGWMHGAQMVAFNMQGGGHYLRYMEGMFRANGGCGYIKKPDILLNDNNIFDPRAFRQVQKTLQVLVYMGDGWRSDFGPTHFDFYSPPDFRVEVGIHGVQADKAMKYTSTVEDDWVPVWNQELSFRLTVPELALLYIKVVERDFSGTHDFGGQTCLPVSQLREGIRVVRLRNRKGELYNSVKLLIQFHFHHHTL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00332 577 Gene3D C2 domain 440 576 IPR035892 -
Phco3g00332 577 Gene3D Phosphatidylinositol (PI) phosphodiesterase 112 439 IPR017946 GO:0006629|GO:0008081
Phco3g00332 577 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 341 427 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Phco3g00332 577 MobiDBLite consensus disorder prediction 256 281 - -
Phco3g00332 577 SMART plcx_3 114 259 IPR000909 -
Phco3g00332 577 Gene3D - 32 111 - -
Phco3g00332 577 Pfam C2 domain 471 547 IPR000008 -
Phco3g00332 577 SUPERFAMILY EF-hand 15 115 IPR011992 -
Phco3g00332 577 SMART plcy_3 312 428 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Phco3g00332 577 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 339 425 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Phco3g00332 577 SUPERFAMILY PLC-like phosphodiesterases 114 429 IPR017946 GO:0006629|GO:0008081
Phco3g00332 577 FunFam Phosphoinositide phospholipase C 111 438 - -
Phco3g00332 577 SMART C2_3c 445 553 IPR000008 -
Phco3g00332 577 Pfam Phosphatidylinositol-specific phospholipase C, X domain 116 259 IPR000909 -
Phco3g00332 577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 445 572 IPR035892 -
Phco3g00332 577 CDD C2_PLC_like 444 572 - -
Phco3g00332 577 ProSiteProfiles C2 domain profile. 422 555 IPR000008 -
Phco3g00332 577 FunFam Phosphoinositide phospholipase C 440 573 - -
Phco3g00332 577 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 19 572 IPR001192 GO:0035556
Phco3g00332 577 PRINTS Phospholipase C signature 366 387 IPR001192 GO:0035556
Phco3g00332 577 PRINTS Phospholipase C signature 119 137 IPR001192 GO:0035556
Phco3g00332 577 PRINTS Phospholipase C signature 145 165 IPR001192 GO:0035556
Phco3g00332 577 PRINTS Phospholipase C signature 387 405 IPR001192 GO:0035556
Phco3g00332 577 PRINTS Phospholipase C signature 539 549 IPR001192 GO:0035556
Phco3g00332 577 PRINTS Phospholipase C signature 243 260 IPR001192 GO:0035556
Phco3g00332 577 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 114 259 - -
Phco3g00332 577 Pfam Phosphoinositide-specific phospholipase C, efhand-like 35 104 IPR015359 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00332 Phco-Chr3 2339141 2349056 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00332 3 2339141 2349056 Phco3g00332 3 2339141 2349056 ECH
Phco3g00332 3 2339141 2349056 Phco2g02775 2 57204995 57209292 ECH
Phco3g00332 3 2339141 2349056 Phco3g00739 3 6052676 6057503 ECH