Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02775 ATGTCCAAACAGACTTACAGCTTCTGTTTCTGCTTCCGCCGCCGCTTCAGACTCCCCTTGTCGGAGGCCCCTCCGGAGATAAGGACCCTTTTTGACCACTATTCCAATGAGCAAGGCGTCATGACAGCCTCTCACGTCCGCAGTTTCCTGGTTGAGGTGCAGAAGGAGGAGAGTGCCACTGAGGAGGAAGCACAGGCCATCATCGATGGCCACAAGCATCTCAGCATCTTTCACCGAAGAGGTCTCAATCTCGAGAGTTTCTTCAACTACCTCTTCAGTCACAATAATAATCCACCTCTCTCACCTTCTCTTGGGGTGCACCAAGATATGTCTTCACCGTTGTCTCATTACTTCATTTATACTGGTCATAATTCCTATCTAACTGGGAACCAACTTAGCAGTGACTGCAGTGACCTCCCCATCATCAATGCACTGCAGAATGGTGTAAGGGTGATTGAATTAGATATATGGCCTAATGCATCAAAGGATGATGTGGATGTTCTTCATGGAAGGACATTGACATCTCCTGTGGCACTCATCAAATGTTTGATGTCTATTAAGCAGTATGCCTTTGTTGCCTCGGAATATCCAGTTGTAATAACCTTAGAAGACCACCTCACACCCGATCTTCAGGCCAAAGTGGCTCAGATGGTTACTCAAATATTTGGAGACATACTATTTTCTCCTAGCTCAGAAAGCTTGAAGGAATTTCCTTCTCCTAAATCGCTTAAAAGGAGGATTATCATATCAACCAAACCACCTAAGGAGTACAATGAGGCAAAAGACGTTCAGGAAAAGGAGGAGGAATCACAAAAGGAAAAGCCTGTGGATGATGAAGAAGCATGGGGGAAGGAAGTCCCTAGTTTGAGAGGTGGCACTATTTCTGATTACAAGAACATTGTGGATGAAGATGATCTTGACGATGGAGATGATACTGATGAAGCAGAAAATTCACGTCAAAATGCATCAGACGAATACAGACGTTTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGGTTAAAGGAATGTCTCAAAGTGGATCCTGATACAGTGAGACGTCTGAGTTTAAGTGAGATACAACTTGAAAAGGCTGCTGAAACTCATGGAAAAGAAATTGTAAGGTTTACTCAGCGGAATATTCTGAGGGTGTATCCAAAAGGCACTCGTATTACCTCAACAAATTATAATCCATTGATTGGGTGGATGCATGGAGCCCAGATGGTTGCATTTAACATGCAGGGATACGGTAGATCTCTTTGGTTGATGCAGGGAATGTTCAAAGCCAATGGAGGATGTGGTTATGTTAAGAAACCACATTTTCTATTAGAGTCTGGTCTTAATGATGAGGTCTTTGATCCTAAAGCTCATTTGCCTGTGAAGAAAACTTTGAAAGTGACTATATATATGGGGGAAGGATGGTTTCATGATTTCAAGCACACGCACTTTGATCAATACTCACCCCCTGACTTCTATGCAAGAGTGGGGATTGCTGGAGTCCCTTATGATACTGTTATGAAAAAAACTGGGACCATAGAGGATAATTGGTCTCCATCATGGAATGAGGCATTTGTGTTTCCACTTTCTGTTCCAGAACTGGCTCTGCTTCGTGTAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGCCAAACGTGTTTACCCGTGTGGGAACTAAGAAGTGGAATTCGAGCAGTTCCACTGTATTCCCGCAAAGGAGAAAAGTACGACAATGTGAAGCTTCTAATGCGCTTTGAATTCATTTGA 1776 0.4347 MSKQTYSFCFCFRRRFRLPLSEAPPEIRTLFDHYSNEQGVMTASHVRSFLVEVQKEESATEEEAQAIIDGHKHLSIFHRRGLNLESFFNYLFSHNNNPPLSPSLGVHQDMSSPLSHYFIYTGHNSYLTGNQLSSDCSDLPIINALQNGVRVIELDIWPNASKDDVDVLHGRTLTSPVALIKCLMSIKQYAFVASEYPVVITLEDHLTPDLQAKVAQMVTQIFGDILFSPSSESLKEFPSPKSLKRRIIISTKPPKEYNEAKDVQEKEEESQKEKPVDDEEAWGKEVPSLRGGTISDYKNIVDEDDLDDGDDTDEAENSRQNASDEYRRLIAIHAGKPKGGLKECLKVDPDTVRRLSLSEIQLEKAAETHGKEIVRFTQRNILRVYPKGTRITSTNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPHFLLESGLNDEVFDPKAHLPVKKTLKVTIYMGEGWFHDFKHTHFDQYSPPDFYARVGIAGVPYDTVMKKTGTIEDNWSPSWNEAFVFPLSVPELALLRVEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLYSRKGEKYDNVKLLMRFEFI 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02775 591 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 95 IPR015359 -
Phco2g02775 591 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 10 590 IPR001192 GO:0035556
Phco2g02775 591 SMART C2_3c 463 571 IPR000008 -
Phco2g02775 591 CDD C2_PLC_like 461 590 - -
Phco2g02775 591 Gene3D Phosphatidylinositol (PI) phosphodiesterase 104 456 IPR017946 GO:0006629|GO:0008081
Phco2g02775 591 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 356 442 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Phco2g02775 591 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 108 252 - -
Phco2g02775 591 ProSiteProfiles C2 domain profile. 443 573 IPR000008 -
Phco2g02775 591 Gene3D C2 domain 458 591 IPR035892 -
Phco2g02775 591 PRINTS Phospholipase C signature 236 253 IPR001192 GO:0035556
Phco2g02775 591 PRINTS Phospholipase C signature 557 567 IPR001192 GO:0035556
Phco2g02775 591 PRINTS Phospholipase C signature 381 402 IPR001192 GO:0035556
Phco2g02775 591 PRINTS Phospholipase C signature 113 131 IPR001192 GO:0035556
Phco2g02775 591 PRINTS Phospholipase C signature 139 159 IPR001192 GO:0035556
Phco2g02775 591 PRINTS Phospholipase C signature 402 420 IPR001192 GO:0035556
Phco2g02775 591 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 355 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Phco2g02775 591 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 463 590 IPR035892 -
Phco2g02775 591 MobiDBLite consensus disorder prediction 254 285 - -
Phco2g02775 591 FunFam Phosphoinositide phospholipase C 458 591 - -
Phco2g02775 591 SMART plcx_3 108 252 IPR000909 -
Phco2g02775 591 Pfam Phosphatidylinositol-specific phospholipase C, X domain 110 252 IPR000909 -
Phco2g02775 591 Pfam C2 domain 463 565 IPR000008 -
Phco2g02775 591 CDD PI-PLCc_plant 107 430 - -
Phco2g02775 591 SUPERFAMILY EF-hand 23 110 IPR011992 -
Phco2g02775 591 Gene3D - 22 98 - -
Phco2g02775 591 SUPERFAMILY PLC-like phosphodiesterases 108 444 IPR017946 GO:0006629|GO:0008081
Phco2g02775 591 SMART plcy_3 326 443 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Phco2g02775 591 MobiDBLite consensus disorder prediction 254 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02775 Phco-Chr2 57204995 57209292 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02775 2 57204995 57209292 Phco3g00739 3 6052676 6057503 ECH
Phco3g00332 3 2339141 2349056 Phco2g02775 2 57204995 57209292 ECH
Phco2g02775 2 57204995 57209292 Phco2g02775 2 57204995 57209292 ECH
Phco2g02775 2 57204995 57209292 Phco3g00739 3 6052676 6057503 PCT