Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02255 ATGGACAACGACATCGATGTTCCTTCATTCTTCCTCTGCCCCATTTCTTTACAAATCATGAAGGATCCCGTCACGGTTTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACGTGGCTCTTTTCTAGGAAAAATACCACATGCCCCATCACCAAACAACCCTTGTTAGATTGCACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATCCAAGCCTGGTGTACAATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCAAAACCTCCTGTTAACAAGACTCAGATTTCCAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCATATGCCTCCGAAGACTCAAATCCATCGCTTCGGGAAGCGAGACAAATAAGCGATGCATGGAAGCCGCGGGTGCTGTTGAGTTCCTAGCATCGATTGTAGTCAACAACAACAACAATGATTCTTCAAATGGGGCTGACCCAAATGATGGATCTGGATTCGAGTTGAAAACAACTGCAAGTGATGAAGCATTGAGCCTGCTTTACACTCTTGATTTATCTGAACAAGGGTTGAAGACTCTTCTTAGCTTCAGAAACGGAGACTTCATTGAGTCTTTGACGAGAGTCATGCAGAAGGGGTTCTTTGAATCACGCGCCTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATCCAGTGCAACTGTTGCATCTAAGACAAGAACTTTTCGTGGAACTAGTACAAGTCTTGAAGGATCAGATTTCAACAAAGACATCAAAGGATATCATTCAAACCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAGGCAGTGGAAGCCGGAACAGTTCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGATAGAAAGCCTTGTGAGATGATGCTGGTGCTGTTGGAGATACTGTGCCAGTGTGCCGAAGGAAGAGCAGAACTATTGAGTCATGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATTTTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTTTGTGTTTCCAAGTTCTCTGCGACTCCACATGTTGTTCAAGAGATGGTGAAACTGGGTGTGGTGGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGAAACAAGGCCAAGGAAAAGGCAAGAGAGATACTCAAATTGCATGCTCGGGTGTGGAAGAATTCTCCATGCATACCGAACAATATGCTTTCTTCATACCCGGCTTATGGGTGA 1260 0.4556 MDNDIDVPSFFLCPISLQIMKDPVTVSTGITYDRESIETWLFSRKNTTCPITKQPLLDCTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKTQISKLLKDASHSPLICLRRLKSIASGSETNKRCMEAAGAVEFLASIVVNNNNNDSSNGADPNDGSGFELKTTASDEALSLLYTLDLSEQGLKTLLSFRNGDFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLRQELFVELVQVLKDQISTKTSKDIIQTLIQFSPWGRNRIKAVEAGTVPVLIELLLDCKDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLCVSKFSATPHVVQEMVKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARVWKNSPCIPNNMLSSYPAYG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02255 419 Gene3D - 99 404 IPR011989 -
Phco2g02255 419 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Phco2g02255 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Phco2g02255 419 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Phco2g02255 419 CDD RING-Ubox_PUB 8 58 IPR045210 -
Phco2g02255 419 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Phco2g02255 419 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Phco2g02255 419 SUPERFAMILY RING/U-box 5 83 - -
Phco2g02255 419 SUPERFAMILY ARM repeat 113 388 IPR016024 -
Phco2g02255 419 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02255 Phco-Chr2 53223674 53224933 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02255 2 53223674 53224933 Phco2g02255 2 53223674 53224933 ECH
Phco2g02255 2 53223674 53224933 Phco6g00123 6 1172343 1173880 PCT
Phco6g00124 6 1193836 1195071 Phco2g02255 2 53223674 53224933 PCT