Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00123 ATGGAGGAAATTGAAGTGCCTCAATACTTCAATTGCCCTATATCCCTCCAAATCATGAGGGACCCCGTTACGGCCATAACGGGCATAACTTACGATCGAGAAAGCATTGAACAATGGCTATTCAATAACAAGAACAGCACATGCCCCGTGTCCAAACAACTCCTCCCAAGAGACTCTGATCTAACCCCTAACCACACCCTTCGGCGCTTGATCCAAGCCTGGTGCACCCAACACGCTTCACTTGGGATCGTTCGCATTCCAACTCCCAAACCCCCTCTCCACAAAATCCAAGTCCTTAAACTCCTCAAAGACCTCCACAACCACAAAAGCCTCGTGCAGTTGGAGCTTCTTGCTGCGGAGAACGAGAGGAACAGAAAGTGCTTGCTTGAGGCTGGGGTCCCAAGGGCCATGATCATCTTCATCATCAATTGCTATAGAAAAGGTCAAATCCAAAAGGGTCTCCATGAAGCTCTTAGCATATTGCAGTTTGTCAAGATCCCCAAGAACGAATGGCCGCTGCTTGTGAAGGACCACGACCAAACATTGGATTCTTTAACATGGATTCTATGTAACGAGGAAATGGAAAACTCCATTGCTGTGAAATCCCACGCTGTTCTACTTCTAAAGAAGATCATCAACAAGGGCGACACGTGTCACGTTCTGGACAGACTGAAACCCGAATGCTTCGAAGCAATGGTGAAGATTCTGAGACACGGAGTGACCCAACAAGGAACGAGTGCAGCACTTCACATTCTGTTAAGCGCTTCTTCTTCGACGCGAAACAGGATCATGATGGTGGAAGCTGGTGTGGTTCACGAAGTGGTGGAGATCGAACTGGGGGCGCCGGAGAAGAGAGTCACGGAACTAACGCTAGCTATATTGTTCCACTTGTGTTGTTGCGCCAACGGGAGAGCCAAGTTCTTGAGCCATGAAGGGGCCATCGCGGTGGTGACGGAGAGGATACTGAAGGTGTCTGCGGCGGTGGATGATAGGGCGGTGTTTGTTTTGGCGATGGTGGCAAAGTTTTCGGGGACGAAGGTGGTTTTGCAGGAGATGTTGAAGGTGGGAAGCATGGCGAAGCTTTGCATGGTGGTTCAGGCTGATAGGGCAAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACACTCTGAGGTCTGGAGTGACTCGCTTTGCTTTCCTCATTCGTCGTTTTGTGCGTATGTCCGCTACTGA 1218 0.4943 MEEIEVPQYFNCPISLQIMRDPVTAITGITYDRESIEQWLFNNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQHASLGIVRIPTPKPPLHKIQVLKLLKDLHNHKSLVQLELLAAENERNRKCLLEAGVPRAMIIFIINCYRKGQIQKGLHEALSILQFVKIPKNEWPLLVKDHDQTLDSLTWILCNEEMENSIAVKSHAVLLLKKIINKGDTCHVLDRLKPECFEAMVKILRHGVTQQGTSAALHILLSASSSTRNRIMMVEAGVVHEVVEIELGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKVGSMAKLCMVVQADRAKYLKDKAMEILKEHSEVWSDSLCFPHSSFCAYVRY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00123 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Phco6g00123 405 Gene3D - 94 386 IPR011989 -
Phco6g00123 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Phco6g00123 405 SUPERFAMILY RING/U-box 3 79 - -
Phco6g00123 405 PANTHER WDSAM1 PROTEIN 2 395 IPR045185 GO:0061630
Phco6g00123 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Phco6g00123 405 CDD RING-Ubox_PUB 7 58 IPR045210 -
Phco6g00123 405 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Phco6g00123 405 SUPERFAMILY ARM repeat 114 371 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00123 Phco-Chr6 1172343 1173880 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00123 6 1172343 1173880 Phco6g00123 6 1172343 1173880 ECH
Phco2g02255 2 53223674 53224933 Phco6g00123 6 1172343 1173880 PCT