Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00124 ATGGACCAAATCGACGTGCCTCCGTTCTTCCTCTGCCCTATTTCCCTCGAACTCATGAAGGACCCCGTAACAGTCTCCACCGGAATCACCTACGACCGCCACAGCATCGAGAAATGGCTCTTCGCCTCAAACAACGCCACGTGTCCCGTCACGAAGCAGCCTCTCCTCCCTGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGGCCTGGTGCACCATCAACGCCTCCCATGGCATCCAACGAATCCCAACGCCAAAGCCCCCGGTCGACAAAACCATCATCCAAAACCTCCTCAAAGACGCTTCCGGCTCCCCCAACCTCCAGCTCCAGTGCCTCCGAACCCTCAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGCTCCATCGAATCCGCAGGCGCGGTTAAATTCCTAGCTTCGGTTATAACCAACACTATAAACTCCTGTTTAGACGATGACGTGGAGCTGGAGTTGAAAGCAAGCGTTGCGGACGAAGCATTGAGCTTATTACACAACATTCAATTATCCGAAACGGGTTTGAAGACTCTACTGAGTCACCCCGAGTTTACACACTCGTTAACCAAGGTTATGCAGAAAGGAATCTACGAGTCACGCGCTTACGCTGTTTTTCTGCTGAAGTCGTTGTCAGAAGTGGCGGATCCGGTGCACTTAATTAACCTAAAACCGGAGCTGTTTATCGAACTGGTTCAAGTCCTTAAGGACCAGATTTCGCAGAAGGCTTCCAAGGCCACGCTTCACACACTGATTCAGGTGTGTCCGTGGGCGAGGAATAGGGTGAAAGCGGTGGAGGCCGGAGCGGTGCCGGTTATCGTGGAGCTTCTTCTGGAATGCAGGGAAAGGAAGCCCTGCGAGATGATGCTCGTACTGTTGGAGATTCTGTGTCAGAGCGCGGACGGGCGTGCGGAGTTGCTGGCGCACGCGGCGGGGGTGGCGATCGTGGCCAAGAAGATTTTGAGGGTGTCCACGACGGCCAACGACAGGGCGGCGAAGATTCTGTTGGCCGTGTGTAGATTCTCGGCGACGCCGAGCGTGGTGCAGGAGATGGTGCAACTGGGGGTGGTTGCGAAGCTCTGCTTGGTGCTGCAGGTGGATAGTGGGAACAAGGCGAAGGAAAAAGCCAGGGAGATTCTCAAACTGCACGCCAAAGCGTGGAAGAACTCCCCTTGCATACCTGGGCACTTGCTTGCTTCCTATCCGATCACTTCTTGA 1236 0.5494 MDQIDVPPFFLCPISLELMKDPVTVSTGITYDRHSIEKWLFASNNATCPVTKQPLLPDLTPNHTLRRLIQAWCTINASHGIQRIPTPKPPVDKTIIQNLLKDASGSPNLQLQCLRTLKSIASESQTNKRSIESAGAVKFLASVITNTINSCLDDDVELELKASVADEALSLLHNIQLSETGLKTLLSHPEFTHSLTKVMQKGIYESRAYAVFLLKSLSEVADPVHLINLKPELFIELVQVLKDQISQKASKATLHTLIQVCPWARNRVKAVEAGAVPVIVELLLECRERKPCEMMLVLLEILCQSADGRAELLAHAAGVAIVAKKILRVSTTANDRAAKILLAVCRFSATPSVVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHAKAWKNSPCIPGHLLASYPITS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00124 411 SUPERFAMILY ARM repeat 96 382 IPR016024 -
Phco6g00124 411 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Phco6g00124 411 Pfam U-box domain 6 74 IPR003613 GO:0004842|GO:0016567
Phco6g00124 411 Gene3D - 93 396 IPR011989 -
Phco6g00124 411 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Phco6g00124 411 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Phco6g00124 411 CDD RING-Ubox_PUB 7 55 IPR045210 -
Phco6g00124 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Phco6g00124 411 SUPERFAMILY RING/U-box 3 79 - -
Phco6g00124 411 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00124 Phco-Chr6 1193836 1195071 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00124 6 1193836 1195071 Phco6g00124 6 1193836 1195071 ECH
Phco6g00124 6 1193836 1195071 Phco2g02255 2 53223674 53224933 PCT