Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02150 ATGCGTTCCACCAACACTACCACCTGTGCTGCATCAAGCAGCGGAGCCTCTAACGGTAACACAGGGCGCCACCCTGTGTACCGCGGAGTGAGGCGTAGGAGTAGTGGAAAATGGGTTTCTGAAATCCGTGAGCCCAGAAAACCTAACAGAATTTGGTTAGGGACATTTACCACCCCTGAAATGGCTGCTATTGCCTATGACGTCGCAGCGCTTGCTCTTAAGGGGAAGGATGCTGAACTCAACTTCCCTAACTCCGCCTCCTCTCTTCCCGTTCCTGCTTCATCGGCTGCTCGTGACATTCAGATGGCTGCGGCCAGTGCTGCAGCCGCTGTCGGAGCAGCTAATGATGCACTAAGTGAAGGAAGCCGAGGAGGGAATGTTTCGGTTTCAATGGCACAAGAGTTTTCAGGGGGAAACTTAAACCACTTTGTGGATGAGGACTTGATCTTTGATATGCCGAATATTCTGGTTAACATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACAATTTTGCTGCTACAGATTATGACTACATGGATGAAAATCCTAACCTCTGGGGTTTCCCTTACTAG 579 0.5026 MRSTNTTTCAASSSGASNGNTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFTTPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQMAAASAAAAVGAANDALSEGSRGGNVSVSMAQEFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFAATDYDYMDENPNLWGFPY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02150 192 MobiDBLite consensus disorder prediction 1 21 - -
Phco2g02150 192 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Phco2g02150 192 MobiDBLite consensus disorder prediction 1 27 - -
Phco2g02150 192 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Phco2g02150 192 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Phco2g02150 192 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Phco2g02150 192 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Phco2g02150 192 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Phco2g02150 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 188 IPR045277 GO:0003700
Phco2g02150 192 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Phco2g02150 192 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Phco2g02150 192 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02150 Phco-Chr2 52229425 52230003 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g02150 AP2 4.8e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02150 2 52229425 52230003 Phco2g02150 2 52229425 52230003 ECH
Phco2g02150 2 52229425 52230003 Phco6g00617 6 6115520 6116707 PCT
Phco6g00619 6 6127677 6128255 Phco2g02150 2 52229425 52230003 PCT