Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00619 ATGCAGAAACGAAAAGCTGGGAGGAAGAAGTTCAAAGAAACACGTCACCCTCTCTACAAAGGCGTAAGGCAGAGGAAGGGGAAGTGGGTGTGTGAGTTCCGACAACCTAATAAGAAGAACGCACGCTTGTGGCTTGGGACCTTCTCACGCCCCGACATGGCTGCTGTTGCGTTTGACGTTGCCGCATTGGCTTTCAAGGGTGACAAGGCTTCCTTGAACTTCCCTGAAGCCATTTCCTTCTTGCCGCGTCTCAACTCAGGTACGTCCTCTGTAAGGACGATTCAGTTTGCCGCGACGCAGGCTGCGGAGAAGCTTCTTTCTTGCACTGAGTTTCAAAAGCTGAGGGACGATGTTTCTTCTCATCATGAAGGTTCTAGAAACTTCTTTTGGAATGAAGATTGTTTGAAGTTGGCATCGGAAGAAAGTTCTAGAAGGTTCTTTTGGGATGAGGATGAGGTGTTTAACATGCCGGAGTTGTTGAACAGCATGGCGGAAGCACTGATCATTGCACCGCCGGCTTTGCAGAAGGGGTTCAATTGGGTTGATGGAGAAACCACAGTAGATTTGACTCTATGGTGA 579 0.4888 MQKRKAGRKKFKETRHPLYKGVRQRKGKWVCEFRQPNKKNARLWLGTFSRPDMAAVAFDVAALAFKGDKASLNFPEAISFLPRLNSGTSSVRTIQFAATQAAEKLLSCTEFQKLRDDVSSHHEGSRNFFWNEDCLKLASEESSRRFFWDEDEVFNMPELLNSMAEALIIAPPALQKGFNWVDGETTVDLTLW 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00619 192 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Phco6g00619 192 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Phco6g00619 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 192 IPR045277 GO:0003700
Phco6g00619 192 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Phco6g00619 192 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Phco6g00619 192 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Phco6g00619 192 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Phco6g00619 192 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Phco6g00619 192 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00619 Phco-Chr6 6127677 6128255 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g00619 AP2 2.4e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00619 6 6127677 6128255 Phco6g00619 6 6127677 6128255 ECH
Phco6g00619 6 6127677 6128255 Phco2g02150 2 52229425 52230003 PCT