Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00617 ATGGCTTCACTCAATTGCCTTCCACTTTCACTCGCAACACACACCTTCACACACCACATAGACACCACCACCACCACCACCACCACCATGTATTCTAATAATGAAACCGGCAGCAGCAGAGCCTCTTCCGGAACCAGCCGCTACCGCGGTGTGCGCCGTAGGAGCAACGGGAAATGGGTGTCTGAGATTCGTGAGCCCAAAAAGCCTAGCAGGATTTGGTTAGGCACATTCCCTACACCTGAAATGGCCGCAGTGGCTTATGACGTGGCAGCTTATGCTCTCAAGGGTAAGGACGCTGAGCTCAATTTCCCTGACTCCGCTTCTTCCCTTCCTGTCCCCGCTTCACTCTCGGCGCGTGACATTCAGATGGCGGCAGCCGCTGCTGCGGGGGCTGCTGGAGCTGCGAAGGATGCTATGCAGACGCCAACAGGGAATTATAACTCTTCAGGGTTACAAGAGAACCAAGCAGGGATGAGTAATCAGTTCGTGGACGAGGATTTGATCTTTGACATGCCGAATGTTCTGGTCAATATGGCTCAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTTTGGAACCCAATAGCCCAGAAAACATCGAACATGAAACAAGCCTGTGGAATTTCCCTTAA 636 0.522 MASLNCLPLSLATHTFTHHIDTTTTTTTTMYSNNETGSSRASSGTSRYRGVRRRSNGKWVSEIREPKKPSRIWLGTFPTPEMAAVAYDVAAYALKGKDAELNFPDSASSLPVPASLSARDIQMAAAAAAGAAGAAKDAMQTPTGNYNSSGLQENQAGMSNQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEPNSPENIEHETSLWNFP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00617 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 45 209 IPR045277 GO:0003700
Phco6g00617 211 MobiDBLite consensus disorder prediction 27 53 - -
Phco6g00617 211 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Phco6g00617 211 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Phco6g00617 211 MobiDBLite consensus disorder prediction 27 50 - -
Phco6g00617 211 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Phco6g00617 211 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Phco6g00617 211 CDD AP2 46 106 IPR001471 GO:0003700|GO:0006355
Phco6g00617 211 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Phco6g00617 211 SUPERFAMILY DNA-binding domain 46 106 IPR016177 GO:0003677
Phco6g00617 211 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Phco6g00617 211 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00617 Phco-Chr6 6115520 6116707 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g00617 AP2 6.6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00617 6 6115520 6116707 Phco6g00617 6 6115520 6116707 ECH
Phco2g02150 2 52229425 52230003 Phco6g00617 6 6115520 6116707 PCT