Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02043 ATGTTCTCTTCCTCTCCACCGTTTCCTTCATCTTCTTCGCCTTCAGTTATGATGCTTCATGAACAAGCTGCTCCAGCAGTTGCATCCTGGTCTTCTAGTTCTACAGCTCGGCATTTTCCTACCTCTGTCCTCTTACAAGAACAGCGTGAGGAGTATAGGCCCCTACTGCACGTGAATAATAAGGAGGCAACGTTAAATACAAGGCAGATGGATACGACATCAGTTCAAGAAAAAAGTAACACAGGCAATCCTGATCAGTTAGTGCATGATTTTGTTCACCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTATCCAACTAGGGGAATTGCTGCTTCTTCGACTCTTCAGCCTGTTGATGATGATTCAGATGGTCTGCCAAGAAATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCCTCAAAGCAAGCAGCCTCATCAGTTGAAGTTGATGATGATGATGATGTTGATCTACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGGTGTCTCTTCACTAAAAAGGAATAAAATTGTGAGGTCAACACGGATTACAGAGAGACGATCTAAACAGAGAAAAGCATCGAAGTCAAAGCTTCTTGATGAAGAAAGTTACCTTGAAAGAAAATCTTATGTACAGAGAAGGTTACGTTTAGAAAAGAAATTAAATGAAGGATTTGATCAAAACGACCCCCTGCGCATGTTCTTGTCGGATCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTTCAGGATTTATCAAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGGCGGGAACCAACATTAGCTGAATGGGCTGATGTATTGGGCCTTAGTTGTTGTGCCCTGCAGACACAGCTTCATTGTGTTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATATGCGCATGGTAGTTCACATTGCTAAATATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTAAGGGTCTTTTGAAGAGCATTGACAGGTTTAAACCTGGAGCTGGTTGCCGGTTTGGTACTTACGCATACTGGTGGATAAGGCATTCAATAAGGAGGGCGATATTTCTGCATTCCAGGACAATCCGTGTGCCGGAGAATTTATATAGACTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATTCATTCAGGAGGGAAACATTCACCCATCCAAAGAAGAATTAGCAAGAAGGGTGGGAATTACAGTAGACAAGTTGGAAAGTTTACTATTTGCTTCAAGAAATCCAATTTCCATGCAGCAAAGTGTGTGGGCGGACCAAGAGACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGATGTGTGTGTTTCAAAACAGCTAATGAGGAGGGATGTGCACAATCTCCTAAATATGTTAAGCCCTAAAGAAAAGAGCATACTCAGGCTAAGATTTGGTATTGAGGATGGCAAGGAAAAAACGTTGTCAGATATTGGCAAGGTGTTTGGTTTGACCAAGGAAAGGGTCCGACAGTTGGAGAGCCGAGCATTGTCCAAGCTCAAGGACTGTCTTGAAAGTCAAGGACTTGACGCATACATAGACTTGCTTATATAG 1644 0.4258 MFSSSPPFPSSSSPSVMMLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHVNNKEATLNTRQMDTTSVQEKSNTGNPDQLVHDFVHQLHLRSHLQNLLTCYPTRGIAASSTLQPVDDDSDGLPRNAVSLAQQALSASKQAASSVEVDDDDDVDLLSFGLASTSLGVSSLKRNKIVRSTRITERRSKQRKASKSKLLDEESYLERKSYVQRRLRLEKKLNEGFDQNDPLRMFLSDPESRQLLTREEESQLITQLQDLSRLEEVKIRLQSQLRREPTLAEWADVLGLSCCALQTQLHCVNRSKEKLFHANMRMVVHIAKYYQGRGLSLQDLLQEGSKGLLKSIDRFKPGAGCRFGTYAYWWIRHSIRRAIFLHSRTIRVPENLYRLLGKVIEAKKSFIQEGNIHPSKEELARRVGITVDKLESLLFASRNPISMQQSVWADQETTFQEITADSAIEIPDVCVSKQLMRRDVHNLLNMLSPKEKSILRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLESRALSKLKDCLESQGLDAYIDLLI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02043 547 ProSitePatterns Sigma-70 factors family signature 2. 504 530 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 132 543 - -
Phco2g02043 547 Pfam Sigma-70 region 3 391 463 IPR007624 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 384 457 IPR013324 -
Phco2g02043 547 Pfam Sigma-70 region 2 311 375 IPR007627 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 NCBIfam sigma-70 family RNA polymerase sigma factor 309 534 IPR014284 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 Gene3D - 467 546 IPR036388 -
Phco2g02043 547 Gene3D - 228 380 - -
Phco2g02043 547 CDD Sigma70_r4 473 531 - -
Phco2g02043 547 PRINTS Major sigma-70 factor signature 519 530 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 PRINTS Major sigma-70 factor signature 483 495 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 PRINTS Major sigma-70 factor signature 335 348 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 PRINTS Major sigma-70 factor signature 359 367 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 PRINTS Major sigma-70 factor signature 504 519 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 443 543 IPR013324 -
Phco2g02043 547 Gene3D - 384 461 IPR036388 -
Phco2g02043 547 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 231 381 IPR013325 GO:0003700|GO:0006352|GO:0006355
Phco2g02043 547 Pfam Sigma-70, region 4 480 531 IPR007630 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02043 Phco-Chr2 51151423 51155748 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02043 2 51151423 51155748 Phco2g02043 2 51151423 51155748 ECH
Phco2g02043 2 51151423 51155748 Phco6g00679 6 6784481 6789676 PCT
Phco6g01722 6 20615859 20624314 Phco2g02043 2 51151423 51155748 PCT