Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00679 ATGTACTATGCTGTTCTTCTCCTTCCTATGGAATTCGCAAGGACTATGTTCTGTTCCTCTCCACCCTTCCCTCCAAGAACTCACCCTTGGAATATTCACCCCCCGTCTTCTTCTACTTCCGTTTTGATGCTTCGCGAACAAGCTTCGTCTACAGTTGCCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTCCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTCTTCTTCACATGTCTAAAGAAGACAAAACATCGCAGGCAATTTTAAATACAAGGCAGATGGATGTGGACACGGTTCATGAAGAGAATAACACTGGAAATGCTGAACAGATAGTGCTTGACTTTAGGAAGCACCTGCATCTCTGGCCTCGTTTACAGAACTTATTAACTTCCTCGCAAACAGGAGAAATTGCTGCTTCTTCAACTCTACAGCATGTTTCTGTTGACTCTGAGAGGCGTACAGTGCAATGTAATGGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACTGCAAAACAAGCATCCTCAGTAGTTGAAGGCTTGAAATCAATTAAAGCTGATGATGATTCAATTCCTTTTGGTCTGGCTTCCACTGGTTTGGCGGACCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACGAGCAAAACAAAGAAAAGTACCTAAGTCAATAGTTAAAGATGATGACACCTACCTTACAAGAAAGGATGATGCTCAAGAAAGGATACACAAAGAAAAGAAGATAAATGAAGAATTTGATCAAAATGATACCCTGCGCATGTTCTTGAGGGGTCCTGAAACAAAACTTTTGACACTTGAACAAGAATCTGAACTGATTTCTCAGATACAGGACTTACTGAAATTGGAAGAATTGAAGACCAGACTCCAATCTCAATTTGGTAGGGAACCAACTATGGCTGAATGGGCTGAGGGTGCGGGACTTAACTGTCGAATGCTCCATTCACAGCTTCGTCATGGAAACAGAAGCAGAGAAAAGCTTATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGTAGTATGGGCCTTATGAAGAGTGTTGAAAAATTCAATCCCCTGGCTGGTTCCCGCTTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAGTAAGGAAGGCCGTGTTTCGACATTCTAGGACAATCCGTCTGCCGGAGAAGGTATATATCCAATTGGGCAAGATAATGGAAGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGATTGACAAGTTACTATATGCTGCAAGAATTCCAATTTCTATGCAGCAAACAGTGTGGGCTGACCAAGATACAACTTTCCAGGAGATTACTGCAGATCCCACAGTTGAGGCCACAGACTTGAGTGTTGAAAAACAGCTTATGAGGCGGCATGTGCTCAATGTCCTAACTATCTTGCGCCCCAAAGAAAGGAAAATAATCCGACTAAGATATGGTTTTGAAGATGGTGAACAGAGATCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCGTTATATAAGCTAAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTTTATAG 1740 0.4172 MYYAVLLLPMEFARTMFCSSPPFPPRTHPWNIHPPSSSTSVLMLREQASSTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDVDTVHEENNTGNAEQIVLDFRKHLHLWPRLQNLLTSSQTGEIAASSTLQHVSVDSERRTVQCNGVSLAKKALSTAKQASSVVEGLKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRAKQRKVPKSIVKDDDTYLTRKDDAQERIHKEKKINEEFDQNDTLRMFLRGPETKLLTLEQESELISQIQDLLKLEELKTRLQSQFGREPTMAEWAEGAGLNCRMLHSQLRHGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAVRKAVFRHSRTIRLPEKVYIQLGKIMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLYAARIPISMQQTVWADQDTTFQEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQRSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00679 579 Pfam Sigma-70 region 2 343 412 IPR007627 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 476 575 IPR013324 -
Phco6g00679 579 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 161 575 - -
Phco6g00679 579 Pfam Sigma-70, region 4 512 564 IPR007630 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 ProSitePatterns Sigma-70 factors family signature 2. 536 562 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 416 489 IPR013324 -
Phco6g00679 579 PRINTS Major sigma-70 factor signature 391 399 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 PRINTS Major sigma-70 factor signature 551 562 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 PRINTS Major sigma-70 factor signature 367 380 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 PRINTS Major sigma-70 factor signature 515 527 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 PRINTS Major sigma-70 factor signature 536 551 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 Gene3D - 498 578 IPR036388 -
Phco6g00679 579 Pfam Sigma-70 region 3 424 492 IPR007624 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 CDD Sigma70_r4 505 563 - -
Phco6g00679 579 Gene3D - 211 412 - -
Phco6g00679 579 Gene3D - 416 493 IPR036388 -
Phco6g00679 579 NCBIfam sigma-70 family RNA polymerase sigma factor 339 566 IPR014284 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 ProSitePatterns Sigma-70 factors family signature 1. 367 380 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 PIRSF Sigma_factor_SigC 10 579 IPR016262 -
Phco6g00679 579 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 265 413 IPR013325 GO:0003700|GO:0006352|GO:0006355
Phco6g00679 579 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00679 Phco-Chr6 6784481 6789676 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00679 6 6784481 6789676 Phco6g00679 6 6784481 6789676 ECH
Phco2g02043 2 51151423 51155748 Phco6g00679 6 6784481 6789676 PCT