Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01722 ATGGGCATTCCCATGGAAGGGTTGGCGTTTCTTCCATTTGCACACTCACAACTCCTCCTCCCGCTTCCAAAGCTTGCCGCCATTCCCAGTCCTAACAACAATAATATTAATAATACCAATGGATTTGTGTCTCTCAGACCGCACCGTCGACGCTGCTTTCGTTTTCGCACTTCATTGTTTTCCAAGGCACAGGACCTTCTTCTTCCCCAACACCTACAGCAACAGCAAGAAGTCACAGTGAATCCCAATTCTGTGAGCGGGGATTCCATACGTCAGAGATTTCTTCATTTTTATGCTTCCCGCGGTCACAACCTCCTTCCCAGCGCTTCTCTCGTCCCCAATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTCCAATTCAAGCCCATCTTCCTCGGCAAGGTTCCAAGACAAGTATCTTGTGCTGCTACTGCACAGAGATGCATCCGTACTAATGATATCGACAATGTTGGCCTAACTTCCAGACATCATACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCAATGGGCGTGGGAGCTTTCCACCTCAGAGTTTGGTTTGCCACCGGACCGATTGTGGGTTAGTGTTTATGAAGATGATGATGAAGCTTTTCAGCTATGGTCTGATGAGATTGGTGTCCCAGTTGAACGTATAAAAAGGTTGGGAGAAGAAGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATATGTAGATGCTGATCTCAATGATGATACAAGGTTTATAGAGTTTTACAACTTAGTCTTCATGCAATACAACAAAAAGGATGATGGTTCTCTTGAACCTCTAAAACAGAAGAACATAGACACTGGCCTTGGACTGGAGCGTATGGCTCGTATTCTACAACAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGGAGGCCTCTAAGTTAGCAAATGTTTCTTATGGTATTGCTGATGATAAGACAAAGAGGAATCTCAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTGGTTCGACGGCTTATTAGAAGGGTTGCTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGACAGTAGGGGAGACCTTGAAGGAGCGTTTTTACCAATTATTGCTGAGAAGGTTGTGGAATTAAGTACCCACAGTGAGGCTGATGTGAAGAACAAAGCACCTCGTATCTTTGAGGAGCTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTGGAGAGAGGAGAAACGTTGCTTGAGGAGAAACTTGCTGATGCCTTATCAAGTGCAGAAAGAAATGGAACTGTTCCTTGCATGGCTGGCAAAGATGTGTTTCTATTGTATGATACTTATGGATATCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATCGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACATAATACTGTCAAACTTACCATTGAAAATGGGGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACAGACTTCATTGTAAAGCAATGATAGAAAGCCTCATGGTGAATGGAAATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAATAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGATAATCAACCAAAAGCTGTTGTGGAGATAACAGATGTTCAGAAATCATTAGGAAACATATTTGTGCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGATATGAAGCTGAGGCAGCGAGCTAAGGTCCATCATACTGCTACTCATTTACTACAAACTGCCCTTAAAAAAGTTATTGGTCAGAAGACCTCACAAGCTGGTTCACTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCAGGATACTGAACTTGCTGAAATTGAAGTGCTAATCAATGGATGGATTGAGGATGCAACACTACTTCAAACCAAAGTGATGCCTCTCGCTGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTCGTAGAGATTCCTGGTGTATCAATGGAACTATGTGGTGGGACTCACGTCAATAATACTTCTGAAATTCACGGTTTTAAAATAATATCAGAACAGGGTATTGCATCGGGAATCAGGCATATTGAAGCTGTAGCTGGTGAAGCCTTCATTGAATATATCAATGGCCGAGACTTTTATCTAAAGCAGCTATGTTCCACTCTCAAAGCAAACTTTAAATCAACCTTATCTATGGAATCGCTTCTTAGTAATGAGGAGGCTGTAATAGCTGCTGCTGCATCTGAAGCCCTTGCTCTTGCTAAAGCAGCGGTAAAGGTTGCAAAGGATGCAGCTTTACTAGTAAAAAAGAAGCCCCAAGCAGAAGCAGAGTATAGATCCCATGTTTCTTCAAAATCTGATGATTTATTTCTCAAATGGTTTAAACATATGGATGTGGAAGATGGTGTAGCAGGGGAATCCATGGGTGCTGGAGCAGAGATGATGGAAGGTGTTGACCTAAGCCCCAGTGAAGAGGAATCTGATGTAGAACCTTCCCATGAGGAACTTGAGAGCCTGCAGGAACAACTTTCCAACAGTATAGCTGTAAGATCTAGGCGCCAACCAGAAAGAAAAGCTAAAAGAGTCAGAGCAGCAGAGAAGGCTTCCACAAATGTTGCATCTTTTAAGCCTGGCTCCTCCAGCAGAAGAAAGCGTGTTCCCATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTGAGAACAACAACCACTACTTCTAGGCTTCTCACCTCAACTGAAGAAATCAAGTTGTCAGAAGGAATACAGGACCTTCTAAAGCTTGAAAGACTTCAGGAGGATCTTGTAGAAAGATGTGGTGGTCAGCCCACATTTGCTCAATGGGCTGCAGTGGCAGGGGTAGATCAGAAGACACTTAGGAAACGTTTAAGTCATGGTAGATTTTGCAAAGACAAAATGATTAAAAGCAATATAAGACTTGTCATATCAATTGCAAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGTCGAGGCCTTGTAAAAGGTGCTGAAAAGTTTGATGGTACCAAGGGTTTCAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCAAGAAAACAATTGTACAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAGCTGGGTTGTCTATGAAGAGGCTTACTGCTGTACTTTTGACTCCGAAAGCTCCCAGATCTCTGGAACAGAAGATTGGAATCAACCAAAATCTTAAACCTTCAGAAATAATTTCTGATCCTGATGCTGAAACAACTGAAGAACAGCTCCTTAAGCAATTCATGAAGAAGGACCTGCAAGAGGCACTGGAGAGTCTTACTTCAAGGGAGAGACAGGTGGTAAGATGGAGATTTGGCATGGATGATGGAAGGACGAAGACCCTACAACAGATAGGGGAGATGATGGGTGTGAGTAGGGAGAGAATTAGGCAAATTGAGTCGAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAAACATTTCCAGCAGTATTTGGTTCCATAA 3915 0.4281 MGIPMEGLAFLPFAHSQLLLPLPKLAAIPSPNNNNINNTNGFVSLRPHRRRCFRFRTSLFSKAQDLLLPQHLQQQQEVTVNPNSVSGDSIRQRFLHFYASRGHNLLPSASLVPNDPTVLLTIAGMLQFKPIFLGKVPRQVSCAATAQRCIRTNDIDNVGLTSRHHTFFEMLGNFSFGDYFKKQAIQWAWELSTSEFGLPPDRLWVSVYEDDDEAFQLWSDEIGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQQVPNNYETDLIFPIIEEASKLANVSYGIADDKTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVARTGRLLGIKGDSRGDLEGAFLPIIAEKVVELSTHSEADVKNKAPRIFEELKREELRFVQTLERGETLLEEKLADALSSAERNGTVPCMAGKDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVKLTIENGENIAENVPDTEFIGYDRLHCKAMIESLMVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGDNQPKAVVEITDVQKSLGNIFVHKGTVQKGVVEVGKEVEAAVDMKLRQRAKVHHTATHLLQTALKKVIGQKTSQAGSLVAFDRLRFDFNFHRPLQDTELAEIEVLINGWIEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVVEIPGVSMELCGGTHVNNTSEIHGFKIISEQGIASGIRHIEAVAGEAFIEYINGRDFYLKQLCSTLKANFKSTLSMESLLSNEEAVIAAAASEALALAKAAVKVAKDAALLVKKKPQAEAEYRSHVSSKSDDLFLKWFKHMDVEDGVAGESMGAGAEMMEGVDLSPSEEESDVEPSHEELESLQEQLSNSIAVRSRRQPERKAKRVRAAEKASTNVASFKPGSSSRRKRVPMQEVDYSDPLRYLRTTTTTSRLLTSTEEIKLSEGIQDLLKLERLQEDLVERCGGQPTFAQWAAVAGVDQKTLRKRLSHGRFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEAAGLSMKRLTAVLLTPKAPRSLEQKIGINQNLKPSEIISDPDAETTEEQLLKQFMKKDLQEALESLTSRERQVVRWRFGMDDGRTKTLQQIGEMMGVSRERIRQIESSAFKKLKNKKRTKHFQQYLVP 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01722 1304 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 1138 1189 IPR013324 -
Phco6g01722 1304 NCBIfam sigma-70 family RNA polymerase sigma factor 1068 1292 IPR014284 GO:0003700|GO:0006352|GO:0006355
Phco6g01722 1304 ProSitePatterns Sigma-70 factors family signature 2. 1263 1289 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco6g01722 1304 CDD AlaRS_core 88 317 - -
Phco6g01722 1304 Gene3D - 1143 1219 IPR036388 -
Phco6g01722 1304 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 1202 1300 IPR013324 -
Phco6g01722 1304 FunFam Alanine--tRNA ligase 722 775 - -
Phco6g01722 1304 FunFam Alanine--tRNA ligase 84 318 - -
Phco6g01722 1304 FunFam Probable alanine--tRNA ligase, chloroplastic 536 650 - -
Phco6g01722 1304 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 322 532 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Phco6g01722 1304 Gene3D - 661 796 - -
Phco6g01722 1304 Gene3D Bira Bifunctional Protein; Domain 2 85 318 IPR045864 -
Phco6g01722 1304 PRINTS Alanyl-tRNA synthetase signature 302 315 IPR002318 GO:0000166|GO:0005737
Phco6g01722 1304 PRINTS Alanyl-tRNA synthetase signature 275 286 IPR002318 GO:0000166|GO:0005737
Phco6g01722 1304 PRINTS Alanyl-tRNA synthetase signature 353 369 IPR002318 GO:0000166|GO:0005737
Phco6g01722 1304 PRINTS Alanyl-tRNA synthetase signature 377 390 IPR002318 GO:0000166|GO:0005737
Phco6g01722 1304 PRINTS Alanyl-tRNA synthetase signature 153 164 IPR002318 GO:0000166|GO:0005737
Phco6g01722 1304 FunFam Alanine--tRNA ligase, cytoplasmic 651 807 - -
Phco6g01722 1304 SUPERFAMILY ThrRS/AlaRS common domain 650 806 IPR018163 GO:0000166
Phco6g01722 1304 Pfam tRNA synthetases class II (A) 90 653 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Phco6g01722 1304 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 991 1140 IPR013325 GO:0003700|GO:0006352|GO:0006355
Phco6g01722 1304 SUPERFAMILY Translation proteins 545 650 IPR009000 -
Phco6g01722 1304 Pfam Sigma-70 region 2 1070 1139 IPR007627 GO:0003700|GO:0006352|GO:0006355
Phco6g01722 1304 NCBIfam alanine--tRNA ligase 90 830 IPR002318 GO:0000166|GO:0005737
Phco6g01722 1304 Gene3D - 534 650 - -
Phco6g01722 1304 CDD Sigma70_r4 1232 1285 - -
Phco6g01722 1304 Pfam Sigma-70, region 4 1238 1290 IPR007630 GO:0003700|GO:0006352|GO:0006355
Phco6g01722 1304 PANTHER ALANYL-TRNA SYNTHETASE 77 884 - -
Phco6g01722 1304 Pfam Sigma-70 region 3 1149 1225 IPR007624 GO:0003700|GO:0006352|GO:0006355
Phco6g01722 1304 Hamap Alanine--tRNA ligase [alaS]. 86 970 IPR023033 GO:0004813
Phco6g01722 1304 Gene3D - 1224 1304 IPR036388 -
Phco6g01722 1304 SMART tRNA_SAD_4 751 794 IPR012947 GO:0004812|GO:0005524|GO:0043039
Phco6g01722 1304 Gene3D RNA Polymerase Primary Sigma Factor 799 1142 - -
Phco6g01722 1304 Gene3D - 722 775 - -
Phco6g01722 1304 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 85 807 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Phco6g01722 1304 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 751 794 IPR012947 GO:0004812|GO:0005524|GO:0043039
Phco6g01722 1304 MobiDBLite consensus disorder prediction 914 984 - -
Phco6g01722 1304 SUPERFAMILY Class II aaRS and biotin synthetases 87 321 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01722 Phco-Chr6 20615859 20624314 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01722 6 20615859 20624314 Phco2g02043 2 51151423 51155748 PCT