Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00053 ATGGATTCTTCTTCTTCTTCTTCCATTCTCTATTCATCAAACTCCTCACAATCCTCAATGGGATCCCCTCATCACCATCTCCCTTTCAACGAAAACGATCCTGAAGAGATGCTTCTCTATGGGATGATCACCTCATATCAAGAGAGAAGCAGCTCCTGCAAACTCATCATCAAAGAAGAAGAGGTCACTAATAGTAGTAGCAGTAAAAGTTTCCGAGGTGTGCGGAGACGGCCATGGGGAAAGTTTGCGGCAGAGATAAGAGATTCTACCCGACATGGCATAAGGGTATGGCTTGGAACATTCGACAACGCCGAGGCTGCTGCGTTGGCCTATGACCAAGCCGCCTTTGCCATGCGAGGCTCTGCTGCAGTTCTTAACTTTCCCGTGGAAAAGGTGAAGGAGTCACTCAGAGACATGGATTGCTCTCTCTCTCAGCTTCAAGGCTGCTCTCCCGTTGTGGCCTTGAAGAGGAGACATTCCTTGGGACGCAAAATGGCTGCAAAGAAGAAGAAGGAAGAGAGTGATGGTGGTCGTGGTGGTGGTGTTAGGGTGGAGAACGTGGTTGTGTTGGAAGACTTGGGGGAAGAGTATTTGGAACAGTTGTTGATGATGTCTTCTGGTGATGCTTGGTGA 633 0.4866 MDSSSSSSILYSSNSSQSSMGSPHHHLPFNENDPEEMLLYGMITSYQERSSSCKLIIKEEEVTNSSSSKSFRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDNAEAAALAYDQAAFAMRGSAAVLNFPVEKVKESLRDMDCSLSQLQGCSPVVALKRRHSLGRKMAAKKKKEESDGGRGGGVRVENVVVLEDLGEEYLEQLLMMSSGDAW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00053 210 PANTHER DNA-BINDING DOMAIN 25 202 IPR044808 GO:0003700|GO:0009873
Phco6g00053 210 CDD AP2 69 129 IPR001471 GO:0003700|GO:0006355
Phco6g00053 210 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Phco6g00053 210 PRINTS Ethylene responsive element binding protein signature 110 130 IPR001471 GO:0003700|GO:0006355
Phco6g00053 210 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
Phco6g00053 210 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
Phco6g00053 210 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Phco6g00053 210 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Phco6g00053 210 FunFam Ethylene-responsive transcription factor 2 69 130 - -
Phco6g00053 210 MobiDBLite consensus disorder prediction 1 28 - -
Phco6g00053 210 MobiDBLite consensus disorder prediction 1 25 - -
Phco6g00053 210 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00053 Phco-Chr6 537873 538505 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g00053 AP2 4.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01846 2 49011219 49014827 Phco6g00053 6 537873 538505 PCT