Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01844 ATGGAGGACTTAAAGGTAAAGGTGAGTGAAGGGGAAGCAAAGAAAATTAAGTATAGAGGAGTAAGGAGTAGGCCATGGGGAAAGTTTGCAGCAGAGATTAGAGATTCAGCTAGACATGGAGCTCGCGTGTGGCTTGGGACCTTTAACACAGCCGAGGAAGCAGCAAGAGCTTATGATCGTGCTGCTTTTGAAATGAGAGGTACTATGGCCATTCTCAATTTCCCACATGAACACCATCCTTGCAATGTGACTACTCTTAGCAGCAAGTGCTCATCATCTAAAACTGAACTTGGTAAACAAGTTGTGGTATTTGAGTGTCTGGATGATAAATTGTTAGAGGAACTCCTTGATTGTGATGACAAAACCATCAATCAAAACTTGGGCAACTAG 390 0.4282 MEDLKVKVSEGEAKKIKYRGVRSRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFEMRGTMAILNFPHEHHPCNVTTLSSKCSSSKTELGKQVVVFECLDDKLLEELLDCDDKTINQNLGN 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01844 129 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Phco2g01844 129 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Phco2g01844 129 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Phco2g01844 129 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Phco2g01844 129 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Phco2g01844 129 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Phco2g01844 129 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Phco2g01844 129 PANTHER DNA-BINDING DOMAIN 12 105 IPR044808 GO:0003700|GO:0009873
Phco2g01844 129 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Phco2g01844 129 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01844 Phco-Chr2 49003255 49003644 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01844 AP2 1.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01844 2 49003255 49003644 Phco2g01844 2 49003255 49003644 ECH
Phco2g01844 2 49003255 49003644 Phco6g00427 6 4003509 4004321 PCT
Phco6g01042 6 10351867 10352316 Phco2g01844 2 49003255 49003644 PCT